Evidence map›Paper›PMID 27794554›Full record

ArticleNucleic acids research2017

RNAcentral: a comprehensive database of non-coding RNA sequences.

The RNAcentral Consortium, Anton I Petrov, Simon J E Kay, Ioanna Kalvari, Kevin L Howe, Kristian A Gray, Elspeth A Bruford, Paul J Kersey, Guy Cochrane, Robert D Finn and 43 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 161 papers.

0numbers the graph read from it
0cells of the map it votes in
161citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

161 citing papers in PubMed.

  1. Article
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  16. NSUN7 is a catalytically inactive RNA mNature communications · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

101 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

53 authors.

The RNAcentral Consortium
Anton I Petrov
Simon J E Kay
Ioanna Kalvari
Kevin L Howe
Kristian A Gray
Elspeth A Bruford
Paul J Kersey
Guy Cochrane
Robert D Finn
Alex Bateman
Ana Kozomara
Sam Griffiths-Jones
Adam Frankish
Christian W Zwieb
Britney Y Lau
Kelly P Williams
Patricia P Chan
Todd M Lowe
Jamie J Cannone
Robin Gutell
Magdalena A Machnicka
Janusz M Bujnicki
Maki Yoshihama
Naoya Kenmochi
Benli Chai
James R Cole
Maciej Szymanski
Wojciech M Karlowski
Valerie Wood
Eva Huala
Tanya Z Berardini
Yi Zhao
Runsheng Chen
Weimin Zhu
Maria D Paraskevopoulou
Ioannis S Vlachos
Artemis G Hatzigeorgiou
Lina Ma
Zhang Zhang
Joern Puetz
Peter F Stadler
Daniel McDonald
Siddhartha Basu
Petra Fey
Stacia R Engel
J Michael Cherry
Pieter-Jan Volders
Pieter Mestdagh
Jacek Wower
Michael B Clark
Xiu Cheng Quek
Marcel E Dinger

Funding

A Unified Atlas of Dynamic tRNA FunctionR01HG006753 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI LOWE, TODD MICHAEL · 2012 to 2022
$4.6M
The Nomenclature of Human and Vertebrate GenesU24HG003345 · NHGRI · UNIVERSITY OF CAMBRIDGE · PI Elspeth Bruford · 2018 to 2026
$3.9M
Nomenclature of Human and Vertebrate GenesU41HG003345 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN, BRUFORD, ELSPETH · 2013 to 2017
$2.4M
Biotechnology and Biological Sciences Research Council BB/J019232/1NHGRI NIH HHS R01 HG006753NHGRI NIH HHS U24 HG003345Wellcome Trust
6 · The paper itself

Abstract

RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.

Indexed as

Databases, Nucleic AcidAnimalsGenomicsHumansNucleotidesRNA, UntranslatedSequence Analysis, RNASpecies SpecificityNucleotidesRNA, Untranslated

Identifiers

PMID27794554
PMCPMC5210518

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.