Evidence map›Paper›PMID 27794044›Full record

ArticleNucleic acids research2017

Rad51 and RecA juxtapose dsDNA ends ready for DNA ligase-catalyzed end-joining under recombinase-suppressive conditions.

Naoto Konomura, Naoto Arai, Takeshi Shinohara, Jun Kobayashi, Wakana Iwasaki, Shukuko Ikawa, Kohji Kusano, Takehiko Shibata

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Naoto KonomuraCellular & Molecular Biology Laboratory, RIKEN, Wako-shi, Saitama 351-0198, Japan.
Naoto AraiDepartment of Applied Biological Science, Nihon University College of Bioresource Sciences, Fujisawa-shi, Kanagawa 252-0880, Japan narai@brs.nihon-u.ac.jp.
Takeshi ShinoharaCellular & Molecular Biology Laboratory, RIKEN, Wako-shi, Saitama 351-0198, Japan.
Jun KobayashiDepartment of Applied Biological Science, Nihon University College of Bioresource Sciences, Fujisawa-shi, Kanagawa 252-0880, Japan.
Wakana IwasakiCellular & Molecular Biology Laboratory, RIKEN, Wako-shi, Saitama 351-0198, Japan.
Shukuko IkawaCellular & Molecular Biology Laboratory, RIKEN, Wako-shi, Saitama 351-0198, Japan.
Kohji KusanoCenter for Genetic Resource Education & Development, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan.
Takehiko ShibataCellular & Molecular Biology Laboratory, RIKEN, Wako-shi, Saitama 351-0198, Japan tshibata@riken.jp.
RIKEN Center for Sustainable Resource Science · JPNihon University · JPRIKEN Advanced Science Institute · JPKyoto Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RecA-family recombinase-catalyzed ATP-dependent homologous joint formation is critical for homologous recombination, in which RecA or Rad51 binds first to single-stranded (ss)DNA and then interacts with double-stranded (ds)DNA. However, when RecA or Rad51 interacts with dsDNA before binding to ssDNA, the homologous joint-forming activity of RecA or Rad51 is quickly suppressed. We found that under these and adenosine diphosphate (ADP)-generating suppressive conditions for the recombinase activity, RecA or Rad51 at similar optimal concentrations enhances the DNA ligase-catalyzed dsDNA end-joining (DNA ligation) about 30- to 40-fold. The DNA ligation enhancement by RecA or Rad51 transforms most of the substrate DNA into multimers within 2-5 min, and for this enhancement, ADP is the common and best cofactor. Adenosine triphosphate (ATP) is effective for RecA, but not for Rad51. Rad51/RecA-enhanced DNA ligation depends on dsDNA-binding, as shown by a mutant, and is independent of physical interactions with the DNA ligase. These observations demonstrate the common and unique activities of RecA and Rad51 to juxtapose dsDNA-ends in preparation for covalent joining by a DNA ligase. This new in vitro function of Rad51 provides a simple explanation for our genetic observation that Rad51 plays a role in the fidelity of the end-joining of a reporter plasmid DNA, by yeast canonical non-homologous end-joining (NHEJ) in vivo.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairAdenosine DiphosphateCoenzymesDNADNA, FungalDNA, Single-StrandedPlasmidsRad51 RecombinaseRec A RecombinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine DiphosphateCoenzymesDNADNA, FungalDNA, Single-StrandedRAD51 protein, S cerevisiaeRad51 RecombinaseRec A RecombinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID27794044
PMCPMC5224515
OpenAlexW2545855974

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.