Evidence map›Paper›PMID 27794043›Full record

ArticleNucleic acids research2017

Regulation of oxidized base damage repair by chromatin assembly factor 1 subunit A.

Chunying Yang, Shiladitya Sengupta, Pavana M Hegde, Joy Mitra, Shuai Jiang, Brooke Holey, Altaf H Sarker, Miaw-Sheue Tsai, Muralidhar L Hegde, Sankar Mitra

Abstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Generation of Recombinant Nucleosomes Containing Site-Specific DNA Damage.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  4. Review
  5. DNA Double-Strand Breaks as Pathogenic Lesions in Neurological Disorders.International journal of molecular sciences · 2022
    Review
  6. Article
  7. Ligand-induced gene activation is associated with oxidative genome damage whose repair is required for transcription.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Review
  9. The Impact of the Deepwater Horizon Oil Spill upon Lung Health-Mouse Model-Based RNA-Seq Analyses.International journal of environmental research and public health · 2020
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chunying YangDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, TX 77030, USA cyang@houstonmethodist.org.
Shiladitya SenguptaDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, TX 77030, USA sxsengupta@houstonmethodist.org.
Pavana M HegdeDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, TX 77030, USA.
Joy MitraDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, TX 77030, USA.
Shuai JiangBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Brooke HoleyBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Altaf H SarkerBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Miaw-Sheue TsaiBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Muralidhar L HegdeDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, TX 77030, USA.
Sankar MitraDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, TX 77030, USA smitra2@houstonmethodist.org.

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
Etiological Linkage of DNA Damage/Repair Deficiency in Neurodegenerative DiseasesR01NS088645 · NINDS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI HEGDE, MURALIDHAR L · 2015 to 2019
$1.8M
"Repair Co-ordination of Radiation-Induced Clustered Damage In Mammalian Genomes"R01CA158910 · NCI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI MITRA, SANKAR · 2012 to 2016
$1.6M
Repair of Oxidative Genome Damage Associated with Gene ActivationR01GM105090 · NIGMS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI MITRA, SANKAR · 2014 to 2017
$1.2M
NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA158910NIGMS NIH HHS R01 GM105090NINDS NIH HHS R01 NS088645
6 · The paper itself

Abstract

Reactive oxygen species (ROS), generated both endogenously and in response to exogenous stress, induce point mutations by mis-replication of oxidized bases and other lesions in the genome. Repair of these lesions via base excision repair (BER) pathway maintains genomic fidelity. Regulation of the BER pathway for mutagenic oxidized bases, initiated by NEIL1 and other DNA glycosylases at the chromatin level remains unexplored. Whether single nucleotide (SN)-BER of a damaged base requires histone deposition or nucleosome remodeling is unknown, unlike nucleosome reassembly which is shown to be required for other DNA repair processes. Here we show that chromatin assembly factor (CAF)-1 subunit A (CHAF1A), the p150 subunit of the histone H3/H4 chaperone, and its partner anti-silencing function protein 1A (ASF1A), which we identified in human NEIL1 immunoprecipitation complex, transiently dissociate from chromatin bound NEIL1 complex in G1 cells after induction of oxidative base damage. CHAF1A inhibits NEIL1 initiated repair in vitro Subsequent restoration of the chaperone-BER complex in cell, presumably after completion of repair, suggests that histone chaperones sequester the repair complex for oxidized bases in non-replicating chromatin, and allow repair when oxidized bases are induced in the genome.

Indexed as

DNA DamageDNA RepairOxidation-ReductionOxidative StressCell LineChromatinChromatin Assembly Factor-1DNA GlycosylasesGlucose OxidaseHistonesHumansMolecular ChaperonesMultiprotein ComplexesProtein BindingRadiation, IonizingReactive Oxygen SpeciesChromatinChromatin Assembly Factor-1CNOT8 protein, humanDNA GlycosylasesGlucose OxidaseHistonesMolecular ChaperonesMultiprotein ComplexesNEIL1 protein, humanReactive Oxygen SpeciesTranscription Factors

Identifiers

PMID27794043
PMCPMC5314755

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.