Evidence map›Paper›PMID 27793991›Full record

ArticleThe Journal of biological chemistry2016

Core Transmembrane Domain 6 Plays a Pivotal Role in the Transport Cycle of the Sodium/Proline Symporter PutP.

Susanne Bracher, Claudia C Schmidt, Sophie I Dittmer, Heinrich Jung

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Susanne BracherFrom the Division of Microbiology, Department of Biology 1, Ludwig Maximilians University Munich, D-82152 Martinsried, Germany.
Claudia C SchmidtFrom the Division of Microbiology, Department of Biology 1, Ludwig Maximilians University Munich, D-82152 Martinsried, Germany.
Sophie I DittmerFrom the Division of Microbiology, Department of Biology 1, Ludwig Maximilians University Munich, D-82152 Martinsried, Germany.
Heinrich JungFrom the Division of Microbiology, Department of Biology 1, Ludwig Maximilians University Munich, D-82152 Martinsried, Germany hjung@lmu.de.
Ludwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crystal structures of transporters with a LeuT-type structural fold assign core transmembrane domain 6 (TM6') a central role in substrate binding and translocation. Here, the function of TM6' in the sodium/proline symporter PutP, a member of the solute/sodium symporter family, was investigated. A complete scan of TM6' identified eight amino acids as particularly important for PutP function. Of these residues, Tyr-248, His-253, and Arg-257 impact sodium binding, whereas Arg-257 and Ala-260 may participate in interactions leading to closure of the inner gate. Furthermore, the previous suggestion of an involvement of Trp-244, Tyr-248, and Pro-252 in proline binding is further supported. In addition, substitution of Gly-245, Gly-247, and Gly-250 affects the amount of PutP in the membrane. A Cys accessibility analysis suggests an involvement of the inner half of TM6' in the formation of a hydrophilic pathway that is open to the inside in the absence of ligands and closed in the presence of sodium and proline. In conclusion, the results demonstrate that TM6' plays a central role in substrate binding and release on the inner side of the membrane also in PutP and extend the knowledge on functionally relevant amino acids in transporters with a LeuT-type structural fold.

Indexed as

Protein FoldingAmino Acid Transport Systems, NeutralEscherichia coliEscherichia coli ProteinsIon TransportProlineProtein DomainsSodiumStructure-Activity RelationshipSymportersAmino Acid Transport Systems, NeutralEscherichia coli ProteinsProlinePutP protein, E coliSodiumSymportersamino acid transportbioenergeticsmembrane proteinmembrane transportsodium transport

Identifiers

PMID27793991
PMCPMC5207087
OpenAlexW2541758550

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.