Evidence map›Paper›PMID 27791212›Full record

ArticleSoft matter2016

Biophysical characterization of organelle-based RNA/protein liquid phases using microfluidics.

Nicole Taylor, Shana Elbaum-Garfinkle, Nilesh Vaidya, Huaiying Zhang, Howard A Stone, Clifford P Brangwynne

Abstract read
In one paragraph

Article in Soft matter, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
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  14. ATP-induced crosslinking of a biomolecular condensate.bioRxiv : the preprint server for biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nicole TaylorDepartment of Chemical and Biological Engineering, Princeton University, USA. cbrangwy@princeton.edu.
Shana Elbaum-GarfinkleDepartment of Chemical and Biological Engineering, Princeton University, USA. cbrangwy@princeton.edu.
Nilesh VaidyaDepartment of Chemical and Biological Engineering, Princeton University, USA. cbrangwy@princeton.edu.
Huaiying ZhangDepartment of Chemical and Biological Engineering, Princeton University, USA. cbrangwy@princeton.edu.
Howard A StoneDepartment of Mechanical and Aerospace Engineering, Princeton University, USA.
Clifford P BrangwynneDepartment of Chemical and Biological Engineering, Princeton University, USA. cbrangwy@princeton.edu.

Funding

Cell growth control by cell and organelle size-dependent ribosome biogenesisDP2GM105437 · NIGMS · PRINCETON UNIVERSITY · PI BRANGWYNNE, CLIFFORD P · 2012 to 2012
$2.4M
NIGMS NIH HHS DP2 GM105437
6 · The paper itself

Abstract

Living cells contain numerous membrane-less RNA/protein (RNP) bodies that assemble by intracellular liquid-liquid phase separation. The properties of these condensed phase droplets are increasingly recognized as important in their physiological function within living cells, and also through the link to protein aggregation pathologies. However, techniques such as droplet coalescence analysis or standard microrheology do not always enable robust property measurements of model RNA/protein droplets in vitro. Here, we introduce a microfluidic platform that drives protein droplets into a single large phase, which facilitates viscosity measurements using passive microrheology and/or active two-phase flow analysis. We use this technique to study various phase separating proteins from structures including P granules, nucleoli, and Whi3 droplets. In each case, droplets exhibit simple liquid behavior, with shear rate-independent viscosities, over observed timescales. Interestingly, we find that a reported order of magnitude difference between the timescale of Whi3 and LAF-1 droplet coalescence is driven by large differences in surface tension rather than viscosity, with implications for droplet assembly and function. The ability to simultaneously perform active and passive microrheological measurements enables studying the impact of ATP-dependent biological activity on RNP droplets, which is a key area for future research.

Indexed as

MicrofluidicsOrganellesProteinsRNASurface TensionViscosityProteinsRNA

Identifiers

PMID27791212
PMCPMC6724727

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.