Evidence map›Paper›PMID 27791185›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Control of embryonic stem cell self-renewal and differentiation via coordinated alternative splicing and translation of YY2.

Soroush Tahmasebi, Seyed Mehdi Jafarnejad, Ingrid S Tam, Thomas Gonatopoulos-Pournatzis, Edna Matta-Camacho, Yoshinori Tsukumo, Akiko Yanagiya, Wencheng Li, Yaser Atlasi, Maxime Caron and 13 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 74 citations in OpenAlex.

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  18. Locus-Specific Isolation of theInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 4 countries.

Soroush TahmasebiGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Seyed Mehdi JafarnejadGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Ingrid S TamGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Thomas Gonatopoulos-PournatzisDonnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Edna Matta-CamachoGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Yoshinori TsukumoGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Akiko YanagiyaGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Wencheng LiDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103.
Yaser AtlasiDepartment of Molecular Biology, Faculty of Science, Radboud University, Nijmegen, 6525GA, The Netherlands.
Maxime CaronDepartment of Human Genetics, McGill University, Montreal, QC H3A 1A3, Canada.
Ulrich BraunschweigDonnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Dana PearlGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Arkady KhoutorskyDepartment of Anesthesia, McGill University, Montreal, QC, H3G 1Y6, Canada.
Christos G GkogkasPatrick Wild Centre, Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, United Kingdom.
Robert NadonDepartment of Human Genetics, McGill University, Montreal, QC H3A 1A3, Canada.
Guillaume BourqueDepartment of Human Genetics, McGill University, Montreal, QC H3A 1A3, Canada.
Xiang-Jiao YangGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Bin TianDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103.
Hendrik G StunnenbergDepartment of Molecular Biology, Faculty of Science, Radboud University, Nijmegen, 6525GA, The Netherlands.
Yojiro YamanakaGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Benjamin J BlencoweDonnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Vincent GiguèreGoodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Nahum SonenbergDepartment of Biochemistry, McGill University, Montreal, QC H3A 1A3, Canada; nahum.sonenberg@mcgill.ca.
McGill University · CAUniversity of Toronto · CAMcGill University and Génome Québec Innovation Centre · CARadboud University Nijmegen · NLRutgers New Jersey Medical SchoolMcGill University Health Centre · CARutgers, The State University of New Jersey · USUniversity of Edinburgh · GB

Funding

Regulation of Alternative Cleavage and PolyadenylationR01GM084089 · NIGMS · WISTAR INSTITUTE · PI TIAN, BIN · 2008 to 2023
$6.7M
CIHR MOP-111197CIHR MOP-115090CIHR MOP-125885CIHR MOP-142200CIHR MOP-14609NIGMS NIH HHS R01 GM084089
6 · The paper itself

Abstract

Translational control of gene expression plays a key role during the early phases of embryonic development. Here we describe a transcriptional regulator of mouse embryonic stem cells (mESCs), Yin-yang 2 (YY2), that is controlled by the translation inhibitors, Eukaryotic initiation factor 4E-binding proteins (4E-BPs). YY2 plays a critical role in regulating mESC functions through control of key pluripotency factors, including Octamer-binding protein 4 (Oct4) and Estrogen-related receptor-β (Esrrb). Importantly, overexpression of YY2 directs the differentiation of mESCs into cardiovascular lineages. We show that the splicing regulator Polypyrimidine tract-binding protein 1 (PTBP1) promotes the retention of an intron in the 5'-UTR of Yy2 mRNA that confers sensitivity to 4E-BP-mediated translational suppression. Thus, we conclude that YY2 is a major regulator of mESC self-renewal and lineage commitment and document a multilayer regulatory mechanism that controls its expression.

Indexed as

Cell DifferentiationGene Expression Regulation, DevelopmentalAlternative SplicingAnimalsBlastocystCarrier ProteinsCell LineageCell Self RenewalEmbryonic Stem CellsHeterogeneous-Nuclear RibonucleoproteinsIntronsMiceMice, KnockoutModels, BiologicalOctamer Transcription Factor-3PhosphoproteinsCarrier ProteinsEsrrb protein, mouseHeterogeneous-Nuclear RibonucleoproteinsOctamer Transcription Factor-3PhosphoproteinsPolypyrimidine Tract-Binding ProteinPou5f1 protein, mousePtbp1 protein, mouseReceptors, EstrogenRNA, MessengerRNA, Small InterferingTranscription FactorsYy1 protein, mouseYY1 Transcription FactorYY2 protein, mouse4E-BPsembryonic stem cellmRNA translationPTBPYY2

Identifiers

PMID27791185
PMCPMC5098618
OpenAlexW2532000841

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.