Evidence map›Paper›PMID 27791168›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Dynamic translation regulation in Caulobacter cell cycle control.

Jared M Schrader, Gene-Wei Li, W Seth Childers, Adam M Perez, Jonathan S Weissman, Lucy Shapiro, Harley H McAdams

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 67 citations in OpenAlex.

  1. Electron Cryo-Tomography Reveals thebioRxiv : the preprint server for biology · 2025
    Article
  2. Article
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  6. TipN's involvement with centromere segregation in Caulobacter crescentus.bioRxiv : the preprint server for biology · 2023
    Article
  7. Article
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  11. Review
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  16. The DUF1013 protein TrcR tracks with RNA polymerase to control the bacterial cell cycle and protect against antibiotics.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. Article
  19. The type IV pilin PilA couples surface attachment and cell-cycle initiation inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jared M SchraderDepartment of Developmental Biology, Stanford University, Stanford, CA 94305; shapiro@stanford.edu hmcadams@stanford.edu schrader@wayne.edu.ORCID 0000-0002-5728-5882
Gene-Wei LiDepartment of Cellular and Molecular Pharmacology, California Institute of Quantitative Biology, Center for RNA Systems Biology, University of California, San Francisco, CA 94158.
W Seth ChildersDepartment of Developmental Biology, Stanford University, Stanford, CA 94305.
Adam M PerezDepartment of Developmental Biology, Stanford University, Stanford, CA 94305.
Jonathan S WeissmanDepartment of Cellular and Molecular Pharmacology, California Institute of Quantitative Biology, Center for RNA Systems Biology, University of California, San Francisco, CA 94158.
Lucy ShapiroDepartment of Developmental Biology, Stanford University, Stanford, CA 94305; shapiro@stanford.edu hmcadams@stanford.edu schrader@wayne.edu.
Harley H McAdamsDepartment of Developmental Biology, Stanford University, Stanford, CA 94305; shapiro@stanford.edu hmcadams@stanford.edu schrader@wayne.edu.
Stanford University · USQB3 · US

Funding

GENETICS TRAINING PROGRAM FOR PHD CANDIDATEST32GM007790 · NIGMS · STANFORD UNIVERSITY · PI BRUNET, ANNE, KINGSLEY, DAVID M · 1985 to 2020
$12.8M
REGULATION OF DIFFERENTIATION IN CAULOBACTERR01GM032506 · NIGMS · YESHIVA UNIVERSITY · PI SHAPIRO, LUCILLE · 1985 to 2014
$7.1M
Integration of regulatory networks and subcellular architecture to control the Caulobacter cell cycleR35GM118071 · NIGMS · STANFORD UNIVERSITY · PI SHAPIRO, LUCILLE · 2016 to 2020
$3.2M
Probing the function of translational pausing in bacterial protein synthesisR00GM105913 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LI, GENE-WEI · 2015 to 2017
$747k
Probing the function of translational pausing in bacterial protein synthesisK99GM105913 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LI, GENE-WEI · 2013 to 2014
$180k
A systems approach to understand translation and sRNA-mediated gene regulation inF32GM100732 · NIGMS · STANFORD UNIVERSITY · PI SCHRADER, JARED MICHAEL · 2012 to 2014
$150k
Howard Hughes Medical InstituteNIGMS NIH HHS F32 GM100732NIGMS NIH HHS K99 GM105913NIGMS NIH HHS R00 GM105913NIGMS NIH HHS R01 GM032506NIGMS NIH HHS R35 GM118071NIGMS NIH HHS T32 GM007790
6 · The paper itself

Abstract

Progression of the Caulobacter cell cycle requires temporal and spatial control of gene expression, culminating in an asymmetric cell division yielding distinct daughter cells. To explore the contribution of translational control, RNA-seq and ribosome profiling were used to assay global transcription and translation levels of individual genes at six times over the cell cycle. Translational efficiency (TE) was used as a metric for the relative rate of protein production from each mRNA. TE profiles with similar cell cycle patterns were found across multiple clusters of genes, including those in operons or in subsets of operons. Collections of genes associated with central cell cycle functional modules (e.g., biosynthesis of stalk, flagellum, or chemotaxis machinery) have consistent but different TE temporal patterns, independent of their operon organization. Differential translation of operon-encoded genes facilitates precise cell cycle-timing for the dynamic assembly of multiprotein complexes, such as the flagellum and the stalk and the correct positioning of regulatory proteins to specific cell poles. The cell cycle-regulatory pathways that produce specific temporal TE patterns are separate from-but highly coordinated with-the transcriptional cell cycle circuitry, suggesting that the scheduling of translational regulation is organized by the same cyclical regulatory circuit that directs the transcriptional control of the Caulobacter cell cycle.

Indexed as

Cell Cycle CheckpointsProtein Processing, Post-TranslationalBacterial ProteinsCaulobacterCaulobacter crescentusCell CycleChemotaxisFlagellaGene Expression Regulation, BacterialMultigene FamilyOperonRNA, MessengerTranscription FactorsTranscription, GeneticBacterial ProteinsRNA, MessengerTranscription FactorsCaulobactercell cycleregulationribosome profilingtranslation

Identifiers

PMID27791168
PMCPMC5098616
OpenAlexW2537009135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.