Evidence map›Paper›PMID 27791156›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation.

Bo Zhang, Denise M Tieman, Chen Jiao, Yimin Xu, Kunsong Chen, Zhangjun Fei, James J Giovannoni, Harry J Klee

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
37.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 324 citations in OpenAlex.

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  17. Two transcription factors play critical roles in mediating epigenetic regulation of fruit ripening in tomato.Proceedings of the National Academy of Sciences of the United States of America · 2025
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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Bo ZhangHorticultural Sciences, Plant Innovation Center, Genetics Institute, University of Florida, Gainesville, FL 32611.
Denise M TiemanHorticultural Sciences, Plant Innovation Center, Genetics Institute, University of Florida, Gainesville, FL 32611.
Chen JiaoBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853.
Yimin XuBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853.
Kunsong ChenLaboratory of Fruit Quality Biology/Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou 310058, People's Republic of China.
Zhangjun FeiBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853.
James J GiovannoniBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853.
Harry J KleeHorticultural Sciences, Plant Innovation Center, Genetics Institute, University of Florida, Gainesville, FL 32611; hjklee@ufl.edu.
University of Florida · USCornell University · USRobert W. Holley Center for Agriculture & Health · USZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Commercial tomatoes are widely perceived by consumers as lacking flavor. A major part of that problem is a postharvest handling system that chills fruit. Low-temperature storage is widely used to slow ripening and reduce decay. However, chilling results in loss of flavor. Flavor-associated volatiles are sensitive to temperatures below 12 °C, and their loss greatly reduces flavor quality. Here, we provide a comprehensive view of the effects of chilling on flavor and volatiles associated with consumer liking. Reduced levels of specific volatiles are associated with significant reductions in transcripts encoding key volatile synthesis enzymes. Although expression of some genes critical to volatile synthesis recovers after a return to 20 °C, some genes do not. RNAs encoding transcription factors essential for ripening, including RIPENING INHIBITOR (RIN), NONRIPENING, and COLORLESS NONRIPENING are reduced in response to chilling and may be responsible for reduced transcript levels in many downstream genes during chilling. Those reductions are accompanied by major changes in the methylation status of promoters, including RIN Methylation changes are transient and may contribute to the fidelity of gene expression required to provide maximal beneficial environmental response with minimal tangential influence on broader fruit developmental biology.

Indexed as

Cold TemperatureDNA MethylationBiosynthetic PathwaysFruitGene Expression Regulation, PlantPlant ProteinsPrincipal Component AnalysisPromoter Regions, GeneticSolanum lycopersicumVolatile Organic CompoundsPlant ProteinsVolatile Organic Compoundsfruit qualitymethylometranscriptome

Identifiers

PMID27791156
PMCPMC5098663
OpenAlexW2537354999

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.