Evidence map›Paper›PMID 27791062›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Nucleosomal arrangement affects single-molecule transcription dynamics.

Veronika Fitz, Jaeoh Shin, Christoph Ehrlich, Lucas Farnung, Patrick Cramer, Vasily Zaburdaev, Stephan W Grill

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Single-Molecule Techniques to Study Chromatin.Frontiers in cell and developmental biology · 2021
    Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Veronika FitzBiotechnology Center, Technical University Dresden, 01307 Dresden, Germany.
Jaeoh ShinMax Planck Institute for the Physics of Complex Systems, 01187 Dresden, Germany.
Christoph EhrlichBiotechnology Center, Technical University Dresden, 01307 Dresden, Germany.
Lucas FarnungDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Patrick CramerDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Vasily ZaburdaevMax Planck Institute for the Physics of Complex Systems, 01187 Dresden, Germany.
Stephan W GrillBiotechnology Center, Technical University Dresden, 01307 Dresden, Germany; stephan.grill@biotec.tu-dresden.de.
Max Planck Institute of Molecular Cell Biology and Genetics · DEMax Planck Institute for Biophysical Chemistry · DEMax Planck Institute for the Physics of Complex Systems · DE

Funding

European Research Council 281903
6 · The paper itself

Abstract

In eukaryotes, gene expression depends on chromatin organization. However, how chromatin affects the transcription dynamics of individual RNA polymerases has remained elusive. Here, we use dual trap optical tweezers to study single yeast RNA polymerase II (Pol II) molecules transcribing along a DNA template with two nucleosomes. The slowdown and the changes in pausing behavior within the nucleosomal region allow us to determine a drift coefficient,

Indexed as

internucleosomal distanceoptical tweezersPol IIsingle-moleculetranscription

Identifiers

PMID27791062
PMCPMC5111697
OpenAlexW2537449221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.