Evidence map›Paper›PMID 27791038›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Allosteric binding site in a Cys-loop receptor ligand-binding domain unveiled in the crystal structure of ELIC in complex with chlorpromazine.

Mieke Nys, Eveline Wijckmans, Ana Farinha, Özge Yoluk, Magnus Andersson, Marijke Brams, Radovan Spurny, Steve Peigneur, Jan Tytgat, Erik Lindahl and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  7. Modulation of theeLife · 2020
    Article
  8. Article
  9. Review
  10. Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Review
  12. Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Mieke NysLaboratory of Structural Neurobiology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium.
Eveline WijckmansLaboratory of Structural Neurobiology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium.
Ana FarinhaLaboratory of Structural Neurobiology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium.
Özge YolukScience for Life Laboratory, Stockholm and Uppsala, SE-17121 Stockholm, Sweden; Theoretical and Computational Biophysics, Department of Theoretical Physics, Kungliga Tekniska Högskolan Royal Institute of Technology, SE-17121 Stockholm, Sweden.
Magnus AnderssonScience for Life Laboratory, Stockholm and Uppsala, SE-17121 Stockholm, Sweden; Theoretical and Computational Biophysics, Department of Theoretical Physics, Kungliga Tekniska Högskolan Royal Institute of Technology, SE-17121 Stockholm, Sweden.
Marijke BramsLaboratory of Structural Neurobiology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium.
Radovan SpurnyLaboratory of Structural Neurobiology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium.
Steve PeigneurLaboratory of Toxicology and Pharmacology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium.
Jan TytgatLaboratory of Toxicology and Pharmacology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium.
Erik LindahlScience for Life Laboratory, Stockholm and Uppsala, SE-17121 Stockholm, Sweden; Theoretical and Computational Biophysics, Department of Theoretical Physics, Kungliga Tekniska Högskolan Royal Institute of Technology, SE-17121 Stockholm, Sweden; Department of Biochemistry and Biophysics, Center for Biomembrane Research, Stockholm University, SE-17121 Stockholm, Sweden.
Chris UlensLaboratory of Structural Neurobiology, Katholieke Universiteit Leuven, B-3000 Leuven, Belgium; chris.ulens@kuleuven.be.
KU Leuven · BEKTH Royal Institute of Technology · SEStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pentameric ligand-gated ion channels or Cys-loop receptors are responsible for fast inhibitory or excitatory synaptic transmission. The antipsychotic compound chlorpromazine is a widely used tool to probe the ion channel pore of the nicotinic acetylcholine receptor, which is a prototypical Cys-loop receptor. In this study, we determine the molecular determinants of chlorpromazine binding in the Erwinia ligand-gated ion channel (ELIC). We report the X-ray crystal structures of ELIC in complex with chlorpromazine or its brominated derivative bromopromazine. Unexpectedly, we do not find a chlorpromazine molecule in the channel pore of ELIC, but behind the β8-β9 loop in the extracellular ligand-binding domain. The β8-β9 loop is localized downstream from the neurotransmitter binding site and plays an important role in coupling of ligand binding to channel opening. In combination with electrophysiological recordings from ELIC cysteine mutants and a thiol-reactive derivative of chlorpromazine, we demonstrate that chlorpromazine binding at the β8-β9 loop is responsible for receptor inhibition. We further use molecular-dynamics simulations to support the X-ray data and mutagenesis experiments. Together, these data unveil an allosteric binding site in the extracellular ligand-binding domain of ELIC. Our results extend on previous observations and further substantiate our understanding of a multisite model for allosteric modulation of Cys-loop receptors.

Indexed as

Allosteric RegulationAllosteric SiteAnimalsAntipsychotic AgentsBacterial ProteinsChlorpromazineCrystallography, X-RayCysteine Loop Ligand-Gated Ion Channel ReceptorsErwiniaEscherichia coliGene ExpressionHalogenationKineticsModels, MolecularOocytesProtein BindingAntipsychotic AgentsBacterial ProteinsChlorpromazineCysteine Loop Ligand-Gated Ion Channel ReceptorsRecombinant Proteinsallosteric modulationCys-loop receptorligand-gated ion channelnicotinic acetylcholine receptorX-ray crystallography

Identifiers

PMID27791038
PMCPMC5087063
OpenAlexW2530212221

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.