Evidence map›Paper›PMID 27791029›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Crystal structure of the DNA binding domain of the transcription factor T-bet suggests simultaneous recognition of distant genome sites.

Ce Feng Liu, Gabriel S Brandt, Quyen Q Hoang, Natalia Naumova, Vanja Lazarevic, Eun Sook Hwang, Job Dekker, Laurie H Glimcher, Dagmar Ringe, Gregory A Petsko

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Antigen exposure reshapes chromatin architecture in central memory CD8Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Review
  6. Review
  7. Article
  8. The Non-continuum Nature of Eukaryotic Transcriptional Regulation.Advances in experimental medicine and biology · 2022
    Article
  9. Article
  10. The Lrp/AsnC-Type Regulator PA2577 Controls the EamA-like Transporter GeneInternational journal of molecular sciences · 2021
    Article
  11. Review
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 2 countries.

Ce Feng LiuAppel Alzheimer's Disease Research Institute, Brain and Mind Research Institute, Weill Cornell Medical College, New York, NY 10021; Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA 02454; cel2010@med.cornell.edu gpetsko@med.cornell.edu.
Gabriel S BrandtRosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA 02454; Department of Chemistry, Franklin and Marshall College, Lancaster, PA 17604.
Quyen Q HoangRosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA 02454; Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202.
Natalia NaumovaProgram in Systems Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605.
Vanja LazarevicDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Harvard Medical School, Boston, MA 02115.
Eun Sook HwangDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Harvard Medical School, Boston, MA 02115; Division of Life and Pharmaceutical Sciences, College of Pharmacy, Ewha Womans University, Seoul 120-750, Korea.
Job DekkerProgram in Systems Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605.
Laurie H GlimcherDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Harvard Medical School, Boston, MA 02115; Division of Rheumatology, Allergy, and Immunology, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115; Ragon Institute of Massachusetts Institute of Technology, Massachusetts General Hospital, and Harvard University, Charlestown, MA 02129.
Dagmar RingeRosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA 02454.
Gregory A PetskoAppel Alzheimer's Disease Research Institute, Brain and Mind Research Institute, Weill Cornell Medical College, New York, NY 10021; Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA 02454; cel2010@med.cornell.edu gpetsko@med.cornell.edu.
Harvard University · USUniversity of Massachusetts Chan Medical School · USBrandeis University · USBrigham and Women's Hospital · USCornell University · USFranklin & Marshall College · USIndiana University – Purdue University Indianapolis · USMIND Research Institute · US

Funding

Arming the Immune System Against PathogensP01AI056296 · NIAID · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI GLIMCHER, LAURIE HOLLIS · 2003 to 2007
$20.0M
Structural Annotation of the Human GenomeR01HG003143 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Job Dekker · 2003 to 2026
$15.4M
Role of T-bet in the pathogenesis of experimental autoimmune encephalomyelitisZIABC011431 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LAZAREVIC, VANJA · 2012 to 2025
$9.7M
Mechanistic studies on a bimetallic aminopeptidaseF32GM069057 · NIGMS · BRANDEIS UNIVERSITY · PI BRANDT, GABRIEL S · 2003 to 2005
$131k
NHGRI NIH HHS R01 HG003143NIAID NIH HHS P01 AI056296NIGMS NIH HHS F32 GM069057
6 · The paper itself

Abstract

The transcription factor T-bet (Tbox protein expressed in T cells) is one of the master regulators of both the innate and adaptive immune responses. It plays a central role in T-cell lineage commitment, where it controls the T

Indexed as

GenomeAmino Acid SequenceAnimalsBinding SitesChromatinCrystallography, X-RayDNAEnhancer Elements, GeneticEscherichia coliGene ExpressionInverted Repeat SequencesMiceModels, MolecularPromoter Regions, GeneticProtein BindingProtein Interaction Domains and MotifsChromatinDNARecombinant ProteinsT-bet Transcription FactorT-Box Domain Proteinscrystal structureDNA loopingmaster regulatorT-bettranscriptional regulation

Identifiers

PMID27791029
PMCPMC5087062
OpenAlexW2530670612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.