Evidence map›Paper›PMID 27789812›Full record

ArticleScience (New York, N.Y.)2016

Systems-level analysis of mechanisms regulating yeast metabolic flux.

Sean R Hackett, Vito R T Zanotelli, Wenxin Xu, Jonathan Goya, Junyoung O Park, David H Perlman, Patrick A Gibney, David Botstein, John D Storey, Joshua D Rabinowitz

Open access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 167 papers.

0numbers the graph read from it
0cells of the map it votes in
167citing papers in PubMed
18.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

167 citing papers in PubMed, 312 citations in OpenAlex.

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  6. Compromising UDP-sugar nucleotide biosynthesis attenuatesCell surface (Amsterdam, Netherlands) · 2026
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  9. Integrating Spatial Proteogenomics in Cancer Research.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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  11. The return of metabolism: biochemistry and physiology of glycolysis.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  12. Article
  13. Metabolite control of enzyme activity links stress to biosynthetic regulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Hgt17-Adr1 Relationship inJournal of fungi (Basel, Switzerland) · 2025
    Article
  20. Article

107 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Sean R HackettLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Vito R T ZanotelliInstitute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
Wenxin XuLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA. Department of Chemistry, Princeton University, Princeton, NJ 08544, USA.
Jonathan GoyaLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Junyoung O ParkLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
David H PerlmanDepartment of Chemistry, Princeton University, Princeton, NJ 08544, USA.
Patrick A GibneyLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA. Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
David BotsteinLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA. Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
John D StoreyLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA. Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA. Center for Statistics and Machine Learning, Princeton University, Princeton, NJ 08544, USA.
Joshua D RabinowitzLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA. Department of Chemistry, Princeton University, Princeton, NJ 08544, USA. joshr@genomics.princeton.edu.
Princeton University · USETH Zurich · CH

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Genetics of Functional Interactions in YeastR01GM046406 · NIGMS · STANFORD UNIVERSITY · PI BOTSTEIN, DAVID · 2001 to 2015
$9.5M
Tumor cell metabolism in actionR01CA163591 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI JOSHUA D RABINOWITZ, Eileen P. White · 2012 to 2026
$7.0M
Statistical Methods for High-Throughput Gene Expression ProfilingR01HG002913 · NHGRI · UNIVERSITY OF WASHINGTON · PI STOREY, JOHN D · 2004 to 2015
$3.1M
GENETICS OF FUNCTIONAL INTERACTIONS IN YEASTR37GM046406 · NIGMS · STANFORD UNIVERSITY · PI BOTSTEIN, DAVID · 1991 to 2000
$683k
NCI NIH HHS P30 CA016359NCI NIH HHS R01 CA163591NHGRI NIH HHS R01 HG002913NIGMS NIH HHS P50 GM071508NIGMS NIH HHS R01 GM046406NIGMS NIH HHS R37 GM046406
6 · The paper itself

Abstract

Cellular metabolic fluxes are determined by enzyme activities and metabolite abundances. Biochemical approaches reveal the impact of specific substrates or regulators on enzyme kinetics but do not capture the extent to which metabolite and enzyme concentrations vary across physiological states and, therefore, how cellular reactions are regulated. We measured enzyme and metabolite concentrations and metabolic fluxes across 25 steady-state yeast cultures. We then assessed the extent to which flux can be explained by a Michaelis-Menten relationship between enzyme, substrate, product, and potential regulator concentrations. This revealed three previously unrecognized instances of cross-pathway regulation, which we biochemically verified. One of these involved inhibition of pyruvate kinase by citrate, which accumulated and thereby curtailed glycolytic outflow in nitrogen-limited yeast. Overall, substrate concentrations were the strongest driver of the net rates of cellular metabolic reactions, with metabolite concentrations collectively having more than double the physiological impact of enzymes.

Indexed as

Metabolic Networks and PathwaysAllosteric RegulationCitratesGlycolysisKineticsNitrogenPyruvate KinaseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCitratesNitrogenPyruvate KinaseSaccharomyces cerevisiae Proteins

Identifiers

PMID27789812
PMCPMC5414049
OpenAlexW2539530515

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.