Evidence map›Paper›PMID 27789704›Full record

ArticleNucleic acids research2017

KERIS: kaleidoscope of gene responses to inflammation between species.

Peng Li, Ronald G Tompkins, Wenzhong Xiao, the Inflammation and Host Response to Injury Large-Scale Collaborative Research Program

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Transcriptomic congruence analysis for evaluating model organisms.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Modelling physical resilience in ageing mice.Mechanisms of ageing and development · 2019
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Peng LiDepartment of Surgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Ronald G TompkinsDepartment of Surgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Wenzhong XiaoDepartment of Surgery, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA wenzhong.xiao@mgh.harvard.edu.
the Inflammation and Host Response to Injury Large-Scale Collaborative Research Program
Massachusetts General Hospital · US

Funding

WOUND HEALINGP50GM021700 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI MARTYN, JEEVENDRA · 1985 to 2017
$27.2M
Bridging Sustainable Distribution of TRBD Bioinformatics ResourcesR24GM102656 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI XIAO, WENZHONG · 2012 to 2014
$1.6M
Bedside Genomics in Severe TraumaR01GM101401 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI TOMPKINS, RONALD GARY, XIAO, WENZHONG · 2012 to 2013
$826k
NIGMS NIH HHS P50 GM021700
6 · The paper itself

Abstract

A cornerstone of modern biomedical research is the use of animal models to study disease mechanisms and to develop new therapeutic approaches. In order to help the research community to better explore the similarities and differences of genomic response between human inflammatory diseases and murine models, we developed KERIS: kaleidoscope of gene responses to inflammation between species (available at http://www.igenomed.org/keris/). As of June 2016, KERIS includes comparisons of the genomic response of six human inflammatory diseases (burns, trauma, infection, sepsis, endotoxin and acute respiratory distress syndrome) and matched mouse models, using 2257 curated samples from the Inflammation and the Host Response to Injury Glue Grant studies and other representative studies in Gene Expression Omnibus. A researcher can browse, query, visualize and compare the response patterns of genes, pathways and functional modules across different diseases and corresponding murine models. The database is expected to help biologists choosing models when studying the mechanisms of particular genes and pathways in a disease and prioritizing the translation of findings from disease models into clinical studies.

Indexed as

Databases, Nucleic AcidGene Expression RegulationSoftwareAnimalsComputational BiologyDisease Models, AnimalGene Expression ProfilingGenomicsHigh-Throughput Nucleotide SequencingHumansInflammationMiceSpecies SpecificityWeb Browser

Identifiers

PMID27789704
PMCPMC5210651
OpenAlexW2546245270

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.