Evidence map›Paper›PMID 27788149›Full record

ArticlePloS one2016

Transcriptional Profiling of Egg Allergy and Relationship to Disease Phenotype.

Roman Kosoy, Charuta Agashe, Alexander Grishin, Donald Y Leung, Robert A Wood, Scott H Sicherer, Stacie M Jones, A Wesley Burks, Wendy F Davidson, Robert W Lindblad and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Article
  5. Exploring Siglecs: Potential Modulators of Immune Cells in Food Allergy and Therapeutic Applications.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2025
    Review
  6. Review
  7. Review
  8. Multi-omics profiling approach in food allergy.The World Allergy Organization journal · 2023
    Review
  9. Article
  10. Article
  11. Emerging Food Allergy Biomarkers.The journal of allergy and clinical immunology. In practice · 2020
    Review
  12. Review
  13. Review
  14. Article
  15. The Consortium for Food Allergy Research (CoFAR): The first generation.The Journal of allergy and clinical immunology · 2019
    Article
  16. Article
  17. Article
  18. The Initiation of Th2 Immunity Towards Food Allergens.International journal of molecular sciences · 2018
    Review
  19. Immune mechanisms of oral immunotherapy.The Journal of allergy and clinical immunology · 2018
    Review
  20. Systemic innate immune activation in food protein-induced enterocolitis syndrome.The Journal of allergy and clinical immunology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 1 country.

Roman KosoyDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Charuta AgasheDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Alexander GrishinDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Donald Y LeungDepartment of Pediatrics, National Jewish Health, Denver, CO, United States of America.
Robert A WoodDepartment of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Scott H SichererDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Stacie M JonesDepartment of Pediatrics, University of Arkansas for Medical Sciences and Arkansas Children's Hospital, Little Rock, AR, United States of America.
A Wesley BurksDepartment of Pediatrics, University of North Carolina, Chapel Hill, NC, United States of America.
Wendy F DavidsonNational Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD, United States of America.
Robert W LindbladEMMES Corporation, Rockville, MD, United States of America.
Peter DawsonEMMES Corporation, Rockville, MD, United States of America.
Miriam MeradOncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Brian A KiddDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Joel T DudleyDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Hugh A SampsonDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
M Cecilia BerinDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.ORCID http://orcid.org/0000-0002-9051-9249
Icahn School of Medicine at Mount Sinai · USEmmes (United States) · USArkansas Children's Hospital · USJohns Hopkins University · USNational Institute of Allergy and Infectious Diseases · USNational Jewish Health · USUniversity of North Carolina at Chapel Hill · US

Funding

Mechanistic CoreU19AI066738 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SICHERER, SCOTT H · 2005 to 2016
$43.6M
The Mount Sinai Transdisciplinary Center on Early Environmental ExposuresP30ES023515 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Manish Arora · 2014 to 2026
$21.3M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
Mount Sinai Institutes for Clinical and Translational SciencesUL1TR000067 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SAMPSON, HUGH A · 2012 to 2014
$16.5M
Food Allergy Research Consortium and Statistical CenterU01AI066560 · NIAID · THE EMMES COMPANY, LLC · PI DAWSON, PETER RUSSELL, LINDBLAD, ROBERT · 2005 to 2016
$12.8M
UNC Clinical and Translational Science AwardUL1TR000083 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUNGE, MARSCHALL S. · 2012 to 2013
$11.6M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
ORAL TOLERANCE AND COW MILK ALLERGYP01AI044236 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SAMPSON, HUGH · 1999 to 2007
$7.5M
Institute for Clinical and Translational ResearchUL1TR000424 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2012 to 2012
$6.0M
NCATS NIH HHS UL1 TR000039NCATS NIH HHS UL1 TR000067NCATS NIH HHS UL1 TR000083NCATS NIH HHS UL1 TR000154NCATS NIH HHS UL1 TR000424NIAID NIH HHS P01 AI044236NIAID NIH HHS U01 AI066560NIAID NIH HHS U19 AI066738
6 · The paper itself

Abstract

backgroundEgg allergy is one of the most common food allergies of childhood. There is a lack of information on the immunologic basis of egg allergy beyond the role of IgE.

objectiveTo use transcriptional profiling as a novel approach to uncover immunologic processes associated with different phenotypes of egg allergy.

methodsPeripheral blood mononuclear cells (PBMCs) were obtained from egg-allergic children who were defined as reactive (BER) or tolerant (BET) to baked egg, and from food allergic controls (AC) who were egg non-allergic. PBMCs were stimulated with egg white protein. Gene transcription was measured by microarray after 24 h, and cytokine secretion by multiplex assay after 5 days.

resultsThe transcriptional response of PBMCs to egg protein differed between BER and BET versus AC subjects. Compared to the AC group, the BER group displayed increased expression of genes associated with allergic inflammation as well as corresponding increased secretion of IL-5, IL-9 and TNF-α. A similar pattern was observed for the BET group. Further similarities in gene expression patterns between BER and BET groups, as well as some important differences, were revealed using a novel Immune Annotation resource developed for this project. This approach identified several novel processes not previously associated with egg allergy, including positive associations with TLR4-stimulated myeloid cells and activated NK cells, and negative associations with an induced Treg signature. Further pathway analysis of differentially expressed genes comparing BER to BET subjects showed significant enrichment of IFN-α and IFN-γ response genes, as well as genes associated with virally-infected DCs.

conclusionsTranscriptional profiling identified several novel pathways and processes that differed when comparing the response to egg allergen in BET, BER, and AC groups. We conclude that this approach is a useful hypothesis-generating mechanism to identify novel immune processes associated with allergy and tolerance to forms of egg.

Indexed as

Gene Expression ProfilingPhenotypeAdolescentChildChild, PreschoolCytokinesEgg HypersensitivityFemaleHumansMaleMolecular Sequence AnnotationOvumCytokines

Identifiers

PMID27788149
PMCPMC5082817
OpenAlexW2546400456

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.