Evidence map›Paper›PMID 27785156›Full record

ArticleClinical epigenetics2016

Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood.

Kristina Gervin, Bettina Kulle Andreassen, Hanne Sagsveen Hjorthaug, Karin C Lødrup Carlsen, Kai-Håkon Carlsen, Dag Erik Undlien, Robert Lyle, Monica Cheng Munthe-Kaas

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
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  8. Yonsei medical journal · 2020
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  11. Contribution of DNA methylation in chronic stress-induced cardiac remodeling and arrhythmias in mice.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
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  13. Review
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  15. Hypermethylation ofOxidative medicine and cellular longevity · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kristina Gervin *Department of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.ORCID 0000-0002-9851-1890
Bettina Kulle Andreassen *Department of Molecular Biology, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Hanne Sagsveen HjorthaugDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Karin C Lødrup CarlsenDepartment of Pediatrics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Kai-Håkon CarlsenDepartment of Pediatrics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Dag Erik UndlienDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Robert LyleDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Monica Cheng Munthe-KaasDepartment of Pediatrics, Section of Hematology and Oncology, Oslo University Hospital, Oslo, Norway.
Oslo University Hospital · NOUniversity of Oslo · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSeveral studies have reported age-associated changes in DNA methylation in the first few years of life and in adult populations, but the extent of such changes during childhood is less well studied. The goals of this study were to investigate to what degree intra-individual changes in DNA methylation are associated with aging during childhood and dissect the methylation changes directly associated with aging from the effect mediated through variation in cell-type composition (CTC).

resultsWe performed reduced representation bisulfite sequencing (RRBS) in peripheral whole-blood samples collected at 2, 10, and 16 years of age. We identified age-associated longitudinal changes in DNA methylation at 346 CpGs in 178 genes. Analyses separating the effect mediated by CTC variability across age identified 26 CpGs located in 12 genes that associated directly with age. Hence, the CTC changes across age appear to act as a mediator of the observed DNA methylation associated with age. The results were replicated using EpiTYPER in a second sample set selected from the same cohort. Gene ontology analyses revealed enrichment of transcriptional regulation and developmental processes. Further, comparisons of the mean DNA methylation differences between the time points reveal greater differences between 2 to 10 years and 10 to 16 years, suggesting that the identified age-associated DNA methylation patterns manifests in early childhood.

conclusionsThis study reveals insights into the epigenetic dynamics associated with aging early in life. Such information could ultimately provide clues and point towards molecular pathways that are susceptible to aging-related disease-associated epigenetic dysregulation.

Indexed as

CpG IslandsDNA MethylationAdolescentAgingChildChild, PreschoolEpigenesis, GeneticGene OntologyHumansLongitudinal StudiesPhenotypeSequence Analysis, DNAAgingCell-type compositionChildhoodDNA methylationLongitudinal

Identifiers

PMID27785156
PMCPMC5073885
OpenAlexW2538039731

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.