Evidence map›Paper›PMID 27783675›Full record

ArticlePLoS pathogens2016

DNA Polymerase κ Is a Key Cellular Factor for the Formation of Covalently Closed Circular DNA of Hepatitis B Virus.

Yonghe Qi, Zhenchao Gao, Guangwei Xu, Bo Peng, Chenxuan Liu, Huan Yan, Qiyan Yao, Guoliang Sun, Yang Liu, Dingbin Tang and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 137 papers.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 190 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review

77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Yonghe QiNational Institute of Biological Sciences, Beijing, China.
Zhenchao GaoNational Institute of Biological Sciences, Beijing, China.
Guangwei XuNational Institute of Biological Sciences, Beijing, China.ORCID http://orcid.org/0000-0003-3350-5147
Bo PengNational Institute of Biological Sciences, Beijing, China.
Chenxuan LiuNational Institute of Biological Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-9960-1302
Huan YanNational Institute of Biological Sciences, Beijing, China.
Qiyan YaoNational Institute of Biological Sciences, Beijing, China.ORCID http://orcid.org/0000-0001-7253-0420
Guoliang SunNational Institute of Biological Sciences, Beijing, China.ORCID http://orcid.org/0000-0001-5403-5741
Yang LiuNational Institute of Biological Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-4952-7714
Dingbin TangNational Institute of Biological Sciences, Beijing, China.
Zilin SongNational Institute of Biological Sciences, Beijing, China.
Wenhui HeNational Institute of Biological Sciences, Beijing, China.
Yinyan SunNational Institute of Biological Sciences, Beijing, China.
Ju-Tao GuoBaruch S. Blumberg Institute, Doylestown, Pennsylvania, United States of America.
Wenhui LiNational Institute of Biological Sciences, Beijing, China.
National Institute of Biological Sciences, Beijing · CNPeking University · CNBaruch S. Blumberg Institute · USBeijing Normal University · CN

Funding

Evaulation of therapeutic benefits of HBV nucleocapsid assembly inhibitorsR01AI113267 · NIAID · DREXEL UNIVERSITY · PI DU, YANMING, GUO, JU-TAO · 2014 to 2018
$2.9M
NIAID NIH HHS R01 AI113267
6 · The paper itself

Abstract

Hepatitis B virus (HBV) infection of hepatocytes begins by binding to its cellular receptor sodium taurocholate cotransporting polypeptide (NTCP), followed by the internalization of viral nucleocapsid into the cytoplasm. The viral relaxed circular (rc) DNA genome in nucleocapsid is transported into the nucleus and converted into covalently closed circular (ccc) DNA to serve as a viral persistence reservoir that is refractory to current antiviral therapies. Host DNA repair enzymes have been speculated to catalyze the conversion of rcDNA to cccDNA, however, the DNA polymerase(s) that fills the gap in the plus strand of rcDNA remains to be determined. Here we conducted targeted genetic screening in combination with chemical inhibition to identify the cellular DNA polymerase(s) responsible for cccDNA formation, and exploited recombinant HBV with capsid coding deficiency which infects HepG2-NTCP cells with similar efficiency of wild-type HBV to assure cccDNA synthesis is exclusively from de novo HBV infection. We found that DNA polymerase κ (POLK), a Y-family DNA polymerase with maximum activity in non-dividing cells, substantially contributes to cccDNA formation during de novo HBV infection. Depleting gene expression of POLK in HepG2-NTCP cells by either siRNA knockdown or CRISPR/Cas9 knockout inhibited the conversion of rcDNA into cccDNA, while the diminished cccDNA formation in, and hence the viral infection of, the knockout cells could be effectively rescued by ectopic expression of POLK. These studies revealed that POLK is a crucial host factor required for cccDNA formation during a de novo HBV infection and suggest that POLK may be a potential target for developing antivirals against HBV.

Indexed as

Blotting, SouthernCell LineDNA, CircularDNA-Directed DNA PolymeraseDNA, ViralEnzyme-Linked Immunosorbent AssayFluorescent Antibody TechniqueGene Knockout TechniquesHepatitis BHepatitis B virusHepatocytesHumansPolymerase Chain ReactionRNA, Small InterferingTransfectionVirus ReplicationDNA, CircularDNA-Directed DNA PolymeraseDNA, ViralPOLK protein, humanRNA, Small InterferingY-Family DNA Polymerases

Identifiers

PMID27783675
PMCPMC5081172
OpenAlexW2541628542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.