Evidence map›Paper›PMID 27782824›Full record

ArticleBMC structural biology2016

The C-terminal domain of TPX2 is made of alpha-helical tandem repeats.

Luis Sanchez-Pulido, Laurent Perez, Steffen Kuhn, Isabelle Vernos, Miguel A Andrade-Navarro

Open access · hybridAbstract read
In one paragraph

Article in BMC structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Luis Sanchez-PulidoMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, The University of Edinburgh, Western General Hospital, Crewe Road, Edinburgh, EH4 2XU, UK.
Laurent PerezCenter for Genomic Regulation, C/ Dr Aiguader 88, 08003, Barcelona, Spain.
Steffen KuhnFaculty of Biology, Johannes-Gutenberg University, Gresemundweg 2, 55128, Mainz, Germany.
Isabelle VernosCenter for Genomic Regulation, C/ Dr Aiguader 88, 08003, Barcelona, Spain.
Miguel A Andrade-NavarroFaculty of Biology, Johannes-Gutenberg University, Gresemundweg 2, 55128, Mainz, Germany. Andrade@uni-mainz.de.
Johannes Gutenberg University Mainz · DECentre for Genomic Regulation · ESMRC Institute of Genetics and Molecular Medicine · GBUniversità della Svizzera italiana · CH

Funding

Medical Research Council MC_UU_12008/1
6 · The paper itself

Abstract

backgroundTPX2 (Targeting Protein for Xklp2) is essential for spindle assembly, activation of the mitotic kinase Aurora A and for triggering microtubule nucleation. Homologs of TPX2 in Chordata and plants were previously identified. Currently, proteins of the TPX2 family have little structural information and only small parts are covered by defined protein domains.

methodsWe have used computational sequence analyses and structural predictions of proteins of the TPX2 family, supported with Circular Dichroism (CD) measurements.

resultsHere, we report our finding that the C-terminal domain of TPX2, which is responsible of its microtubule nucleation capacity and is conserved in all members of the family, is actually formed by tandem repeats, covering well above 2/3 of the protein. We propose that this region forms a flexible solenoid involved in protein-protein interactions. Structural prediction and molecular modeling, combined with Circular Dichroism (CD) measurements reveal a predominant alpha-helical content. Furthermore, we identify full length homologs in fungi and shorter homologs with a different domain organization in diptera (including a paralogous expansion in Drosophila).

conclusionsOur results, represent the first computational and biophysical analysis of the TPX2 proteins family and help understand the structure and evolution of this conserved protein family to direct future structural studies.

Indexed as

Amino Acid SequenceAnimalsArabidopsisArabidopsis ProteinsCell Cycle ProteinsCircular DichroismHumansMicrotubule-Associated ProteinsMolecular Sequence DataNuclear ProteinsPhosphoproteinsPhylogenyProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsSequence AlignmentArabidopsis ProteinsCell Cycle ProteinsMicrotubule-Associated ProteinsNuclear ProteinsPhosphoproteinsRecombinant ProteinsTPX2 protein, ArabidopsisTPX2 protein, XenopusXenopus ProteinsAlpha-solenoidCircular DichroismProtein sequence analysisProtein sequence tandem repeatsProtein structure predictionTPX2

Identifiers

PMID27782824
PMCPMC5080731
OpenAlexW2537047684

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.