Evidence map›Paper›PMID 27782202›Full record

ArticleScientific reports2016

Exploring the Influence of Environmental Factors on Bacterial Communities within the Rhizosphere of the Cu-tolerant plant, Elsholtzia splendens.

Longfei Jiang, Mengke Song, Li Yang, Dayi Zhang, Yingtao Sun, Zhenguo Shen, Chunling Luo, Gan Zhang

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
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  9. Article
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  11. The microbiota diversity ofFrontiers in microbiology · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Bacterial Community Structure ofMicroorganisms · 2020
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Longfei JiangCollege of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Mengke SongGuangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China.
Li YangCollege of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Dayi ZhangLancaster Environment Centre, Lancaster University, Lancaster, LA1 4YW, UK.
Yingtao SunGuangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China.
Zhenguo ShenCollege of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
Chunling LuoGuangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China.
Gan ZhangGuangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial communities of rhizospheric soils play an important role in the tolerance and uptake of metal-tolerant/hyperaccumulating plants to metals, e.g. the Cu-tolerant Elsholtzia splendens native to China. In this work, pyrosequencing of the bacterial 16S rRNA gene was firstly applied to investigate the rhizospheric bacterial community of E. splendens grown at Cu contaminated sites. The 47 phyla including 11 dominant phyla (>1%) in E. splendens rhizosphere were presented. The effects of Cu and other environmental factors (total organic carbon, total nitrogen and pH) on the rhizospheric bacterial community were studied comprehensively. The phyla abundances were affected by the environmental factors to different extent, and we found pH, instead of Cu concentration, influenced UniFrac distance significantly and was identified as the most important environmental factor affecting bacterial community. In addition, the influence of environmental factors on gene profiles was explored according to the predicted metagenomes obtained by PICRUSt (phylogenetic investigation of communities by reconstruction of unobserved states). Our study illustrates a view about Cu-tolerant E. splendens rhizospheric bacterial communities (composition, diversity and gene profiles) and their influencing factors, giving a hand for the understanding on bacterial community is formed and affected in rhizosphere.

Indexed as

BacteriaCarbonCopperDNA, BacterialDNA, RibosomalHydrogen-Ion ConcentrationLamiaceaeNitrogenPhylogenyPlant RootsRhizosphereRNA, Ribosomal, 16SSoilSoil MicrobiologyCarbonCopperDNA, BacterialDNA, RibosomalNitrogenRNA, Ribosomal, 16SSoil

Identifiers

PMID27782202
PMCPMC5080579

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.