ArticleScientific reports2016
Transcriptome analyses provide insights into the phylogeny and adaptive evolution of the mangrove fern genus Acrostichum.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed.
- The size diversity of the Pteridaceae family chloroplast genome is caused by overlong intergenic spacers.BMC genomics · 2024Article
- Endophytic Fungal Diversity of Mangrove FernsPlants (Basel, Switzerland) · 2024Article
- Whole Genome Duplication Events Likely Contributed to the Aquatic Adaptive Evolution of Parkerioideae.Plants (Basel, Switzerland) · 2024Article
- Adaptive evolution and co-evolution of chloroplast genomes in Pteridaceae species occupying different habitats: overlapping residues are always highly mutated.BMC plant biology · 2023Article
- Article
- Lineage-specific evolution of mangrove plastid genomes.The plant genome · 2020Article
- The complete chloroplast genomes of the mangrove fernMitochondrial DNA. Part B, Resources · 2020Article
- Dating Whole Genome Duplication inInternational journal of molecular sciences · 2019Article
- Transcriptomic Evidence of Adaptive Evolution of the Epiphytic FernInternational journal of genomics · 2019Article
- Identification and characterization of evolutionarily conserved alternative splicing events in a mangrove genus Sonneratia.Scientific reports · 2018Article
- Overlapping Patterns of Gene Expression Between Gametophyte and Sporophyte Phases in the FernFrontiers in plant science · 2018Article
- The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing.National science review · 2017Article
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9 authors.
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Abstract
The mangrove fern genus Acrostichum grows in the extremely unstable marine intertidal zone under harsh conditions, such as high salt concentrations, tidal rhythms and long-term climate changes. To explore the phylogenetic relationships and molecular mechanisms underlying adaptations in this genus, we sequenced the transcriptomes of two species of Acrostichum, A. aureum and A. speciosum, as well as a species in the sister genus, Ceratopteris thalictroides. We obtained 47,517, 36,420 and 60,823 unigenes for the three ferns, of which 24.39-45.63% were annotated using public databases. The estimated divergence time revealed that Acrostichum adapted to the coastal region during the late Cretaceous, whereas the two mangrove ferns from the Indo West-Pacific (IWP) area diverged more recently. Two methods (the modified branch-site model and the K
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