Evidence map›Paper›PMID 27781033›Full record

ArticleMolecular syndromology2016

Exome Sequencing Fails to Identify the Genetic Cause of Aicardi Syndrome.

Caroline Lund, Pasquale Striano, Hanne Sørmo Sorte, Pasquale Parisi, Michele Iacomino, Ying Sheng, Magnus D Vigeland, Anne-Marte Øye, Rikke Steensbjerre Møller, Kaja K Selmer and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular syndromology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

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  7. Aicardi syndrome in a 20-year-old female.American journal of ophthalmology case reports · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 5 countries.

Caroline LundNational Centre for Rare Epilepsy-Related Disorders, Oslo University Hospital, Oslo, Norway.
Pasquale StrianoPediatric Neurology and Muscular Diseases Unit, Department of Neurosciences, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, Rome, Italy.
Hanne Sørmo SorteDepartment of Medical Genetics, Oslo University Hospital, Oslo, Norway.
Pasquale ParisiNESMOS Department, c/o Sant'Andrea Hospital, Faculty of Medicine and Psychology, University of Rome Sapienza, Rome, Italy.
Michele IacominoLaboratory of Neurogenetics, Pediatric Neurology and Muscular Diseases Unit, Department of Neurosciences, University of Genoa, 'G. Gaslini' Institute, Genoa, Rome, Italy.
Ying ShengDepartment of Medical Genetics, Oslo University Hospital, Oslo, Norway.
Magnus D VigelandDepartment of Medical Genetics, Oslo University Hospital, Oslo, Norway.
Anne-Marte ØyeDepartment of Medical Genetics, Oslo University Hospital, Oslo, Norway.
Rikke Steensbjerre MøllerDanish Epilepsy Centre, Dianalund, Odense, Denmark; Institute for Regional Health Services, University of Southern Denmark, Odense, Denmark.
Kaja K SelmerNational Centre for Rare Epilepsy-Related Disorders, Oslo University Hospital, Oslo, Norway; Department of Medical Genetics, Oslo University Hospital, Oslo, Norway.
Federico ZaraLaboratory of Neurogenetics, Pediatric Neurology and Muscular Diseases Unit, Department of Neurosciences, University of Genoa, 'G. Gaslini' Institute, Genoa, Rome, Italy.
Oslo University Hospital · NOIstituto Giannina Gaslini · ITAzienda Ospedaliera Sant'Andrea · ITEpilepsy Action · GBPediatrics and Genetics · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aicardi syndrome (AS) is a well-characterized neurodevelopmental disorder with an unknown etiology. In this study, we performed whole-exome sequencing in 11 female patients with the diagnosis of AS, in order to identify the disease-causing gene. In particular, we focused on detecting variants in the X chromosome, including the analysis of variants with a low number of sequencing reads, in case of somatic mosaicism. For 2 of the patients, we also sequenced the exome of the parents to search for de novo mutations. We did not identify any genetic variants likely to be damaging. Only one single missense variant was identified by the de novo analyses of the 2 trios, and this was considered benign. The failure to identify a disease gene in this study may be due to technical limitations of our study design, including the possibility that the genetic aberration leading to AS is situated in a non-exonic region or that the mutation is somatic and not detectable by our approach. Alternatively, it is possible that AS is genetically heterogeneous and that 11 patients are not sufficient to reveal the causative genes. Future studies of AS should consider designs where also non-exonic regions are explored and apply a sequencing depth so that also low-grade somatic mosaicism can be detected.

Indexed as

Agenesis of corpus callosumAicardi syndromeWhole-exome sequencingX chromosome

Identifiers

PMID27781033
PMCPMC5073591
OpenAlexW2509507063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.