Evidence map›Paper›PMID 27777648›Full record

ArticleStandards in genomic sciences2016

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

Nicolas Tsesmetzis, Pelin Yilmaz, Peter C Marks, Nikos C Kyrpides, Ian M Head, Bart P Lomans

Abstract readEditorial
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources.Database : the journal of biological databases and curation · 2018
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nicolas TsesmetzisShell International Exploration and Production Inc., 3333 HW6S, Houston, 77082 TX USA.ORCID 0000-0001-5246-0568
Pelin YilmazMicrobial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.
Peter C MarksShell International Exploration and Production Inc., 3333 HW6S, Houston, 77082 TX USA.
Nikos C KyrpidesDOE Joint Genome Institute, Walnut Creek, CA 94598 USA.
Ian M HeadSchool of Civil Engineering and Geosciences, Newcastle University, Newcastle upon Tyne, NE1 7RU UK.
Bart P LomansShell Global Solutions International B.V., Rijswijk, Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we introduce a MIxS extension to facilitate the recording and cataloguing of metadata from samples related to hydrocarbon resources. The proposed MIxS-HCR package incorporates the core features of the MIxS standard for marker gene (MIMARKS) and metagenomic (MIMS) sequences along with a hydrocarbon resources customized environmental package. Adoption of the MIxS-HCR standard will enable the comparison and better contextualization of investigations related to hydrocarbon rich environments. The insights from such standardized way of reporting could be highly beneficial for the successful development and optimization of hydrocarbon recovery processes and management of microbiological issues in petroleum production systems.

Indexed as

Environmental packageHydrocarbon resourcesMIxS standardsSequence data

Identifiers

PMID27777648
PMCPMC5059931

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.