Evidence map›Paper›PMID 27777312›Full record

ArticleMolecular and cellular biology2017

MBD4 Facilitates Immunoglobulin Class Switch Recombination.

Fernando Grigera, Robert Wuerffel, Amy L Kenter

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Fernando GrigeraDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, Illinois, USA.
Robert WuerffelDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, Illinois, USA.
Amy L KenterDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, Illinois, USA star1@uic.edu.
Illinois College · USUniversity of Illinois Urbana-Champaign · US

Funding

Role of MBD4 in double strand break formation during class switch recombinationR21AI111762 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2014 to 2015
$439k
NIAID NIH HHS R21 AI111762
6 · The paper itself

Abstract

Immunoglobulin heavy chain class switch recombination (CSR) requires targeted formation of DNA double-strand breaks (DSBs) in repetitive switch region elements followed by ligation between distal breaks. The introduction of DSBs is initiated by activation-induced cytidine deaminase (AID) and requires base excision repair (BER) and mismatch repair (MMR). The BER enzyme methyl-CpG binding domain protein 4 (MBD4) has been linked to the MMR pathway through its interaction with MutL homologue 1 (MLH1). We find that when Mbd4 exons 6 to 8 are deleted in a switching B cell line, DSB formation is severely reduced and CSR frequency is impaired. Impaired CSR can be rescued by ectopic expression of Mbd4 Mbd4 deficiency yields a deficit in DNA end processing similar to that found in MutS homologue 2 (Msh2)- and Mlh1-deficient B cells. We demonstrate that microhomology-rich S-S junctions are enriched in cells in which Mbd4 is deleted. Our studies suggest that Mbd4 is a component of MMR-directed DNA end processing.

Indexed as

AnimalsBase SequenceCell LineCRISPR-Cas SystemsDNA Breaks, Double-StrandedEndodeoxyribonucleasesExonsGene DeletionGene Expression RegulationGenes, DominantGenetic Complementation TestImmunoglobulin Class SwitchingMice, KnockoutProtein IsoformsRecombination, GeneticEndodeoxyribonucleasesMbd4 protein, mouseProtein IsoformsB cellsIg class switchIg class switch recombinationmismatch repairuracil glycosylase

Identifiers

PMID27777312
PMCPMC5214850
OpenAlexW2536102895

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.