Evidence map›Paper›PMID 27776126›Full record

ArticlePLoS genetics2016

The Skp1 Homologs SKR-1/2 Are Required for the Caenorhabditis elegans SKN-1 Antioxidant/Detoxification Response Independently of p38 MAPK.

Cheng-Wei Wu, Andrew Deonarine, Aaron Przybysz, Kevin Strange, Keith P Choe

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 73 citations in OpenAlex.

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  6. Chemical Genetics inACS chemical biology · 2024
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  9. A dicer-related helicase opposes the age-related pathology from SKN-1 activation in ASI neurons.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Cheng-Wei WuDepartment of Biology and Genetics Institute, University of Florida, Gainesville, FL 32611, USA.
Andrew DeonarineDepartment of Cell Biology, Microbiology, and Molecular Biology, University of South Florida, Tampa, FL, 33620.
Aaron PrzybyszDepartment of Anesthesiology, University of Michigan, Ann Arbor, MI 48109.
Kevin StrangeThe MDI Biological Laboratory, Salisbury Cove, ME 04672.
Keith P ChoeDepartment of Biology and Genetics Institute, University of Florida, Gainesville, FL 32611, USA.
University of Florida · USMount Desert Island Biological Laboratory · USUniversity of Michigan–Ann Arbor · USUniversity of South Florida · US

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Dustin Lynn Updike · 2012 to 2026
$60.0M
Understanding the role of thyroid hormone signaling during axolotl limb regenerationP20GM104318 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI DRUMMOND, IAIN A. · 2013 to 2023
$23.0M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Regulation of a C. elegans CIC channel by phosphorylation and membrane retrievalR01DK061168 · NIDDK · VANDERBILT UNIVERSITY · PI STRANGE, KEVIN · 2001 to 2013
$4.1M
NIDDK NIH HHS R01 DK061168NIGMS NIH HHS P20 GM103423NIGMS NIH HHS P20 GM104318NIH HHS P40 OD010440
6 · The paper itself

Abstract

SKN-1/Nrf are the primary antioxidant/detoxification response transcription factors in animals and they promote health and longevity in many contexts. SKN-1/Nrf are activated by a remarkably broad-range of natural and synthetic compounds and physiological conditions. Defining the signaling mechanisms that regulate SKN-1/Nrf activation provides insights into how cells coordinate responses to stress. Nrf2 in mammals is regulated in part by the redox sensor repressor protein named Keap1. In C. elegans, the p38 MAPK cascade in the intestine activates SKN-1 during oxidative stress by promoting its nuclear accumulation. Interestingly, we find variation in the kinetics of p38 MAPK activation and tissues with SKN-1 nuclear accumulation among different pro-oxidants that all trigger strong induction of SKN-1 target genes. Using genome-wide RNAi screening, we identify new genes that are required for activation of the core SKN-1 target gene gst-4 during exposure to the natural pro-oxidant juglone. Among 10 putative activators identified in this screen was skr-1/2, highly conserved homologs of yeast and mammalian Skp1, which function to assemble protein complexes. Silencing of skr-1/2 inhibits induction of SKN-1 dependent detoxification genes and reduces resistance to pro-oxidants without decreasing p38 MAPK activation. Global transcriptomics revealed strong correlation between genes that are regulated by SKR-1/2 and SKN-1 indicating a high degree of specificity. We also show that SKR-1/2 functions upstream of the WD40 repeat protein WDR-23, which binds to and inhibits SKN-1. Together, these results identify a novel p38 MAPK independent signaling mechanism that activates SKN-1 via SKR-1/2 and involves WDR-23.

Indexed as

Activin Receptors, Type IAnimalsAntioxidantsCaenorhabditis elegansCaenorhabditis elegans ProteinsGastrointestinal TractGene Expression Regulation, DevelopmentalHumansInactivation, MetabolicKelch-Like ECH-Associated Protein 1Longevityp38 Mitogen-Activated Protein KinasesPhosphorylationReactive Oxygen SpeciesRNA InterferenceSKP Cullin F-Box Protein LigasesActivin Receptors, Type IACVR1B protein, humanAntioxidantsCaenorhabditis elegans ProteinsKelch-Like ECH-Associated Protein 1p38 Mitogen-Activated Protein KinasesReactive Oxygen SpeciesSKP1 protein, humanSKP Cullin F-Box Protein LigasesSKR-1 protein, C elegansS-Phase Kinase-Associated Proteins

Identifiers

PMID27776126
PMCPMC5077136
OpenAlexW2538973672

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.