Evidence map›Paper›PMID 27774980›Full record

ArticleNature communications2016

Diversity-oriented synthetic strategy for developing a chemical modulator of protein-protein interaction.

Jonghoon Kim, Jinjoo Jung, Jaeyoung Koo, Wansang Cho, Won Seok Lee, Chanwoo Kim, Wonwoo Park, Seung Bum Park

Abstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Scaffold Remodelling of Diazaspirotricycles Enables Synthesis of Diverse spChemistry (Weinheim an der Bergstrasse, Germany) · 2023
    Article
  9. Article
  10. Review
  11. Inhibition of ACE2-Spike Interaction by an ACE2 Binder Suppresses SARS-CoV-2 Entry.Angewandte Chemie (International ed. in English) · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. A one-step, atom economical synthesis of thieno[2,3-European journal of organic chemistry · 2019
    Article
  19. Green and Facile Assembly of Diverse FusedMolecules (Basel, Switzerland) · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jonghoon KimDepartment of Biophysics and Chemical Biology, CRI Center for Chemical Proteomics, Seoul National University, Seoul 151-747, Korea.
Jinjoo JungDepartment of Biophysics and Chemical Biology, CRI Center for Chemical Proteomics, Seoul National University, Seoul 151-747, Korea.
Jaeyoung KooDepartment of Biophysics and Chemical Biology, CRI Center for Chemical Proteomics, Seoul National University, Seoul 151-747, Korea.
Wansang ChoDepartment of Chemistry, Seoul National University, Seoul 151-747, Korea.
Won Seok LeeDepartment of Biophysics and Chemical Biology, CRI Center for Chemical Proteomics, Seoul National University, Seoul 151-747, Korea.
Chanwoo KimDepartment of Chemistry, Seoul National University, Seoul 151-747, Korea.
Wonwoo ParkDepartment of Biophysics and Chemical Biology, CRI Center for Chemical Proteomics, Seoul National University, Seoul 151-747, Korea.
Seung Bum ParkDepartment of Biophysics and Chemical Biology, CRI Center for Chemical Proteomics, Seoul National University, Seoul 151-747, Korea.ORCID 0000-0003-1753-1433

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diversity-oriented synthesis (DOS) can provide a collection of diverse and complex drug-like small molecules, which is critical in the development of new chemical probes for biological research of undruggable targets. However, the design and synthesis of small-molecule libraries with improved biological relevance as well as maximized molecular diversity represent a key challenge. Herein, we employ functional group-pairing strategy for the DOS of a chemical library containing privileged substructures, pyrimidodiazepine or pyrimidine moieties, as chemical navigators towards unexplored bioactive chemical space. To validate the utility of this DOS library, we identify a new small-molecule inhibitor of leucyl-tRNA synthetase-RagD protein-protein interaction, which regulates the amino acid-dependent activation of mechanistic target of rapamycin complex 1 signalling pathway. This work highlights that privileged substructure-based DOS strategy can be a powerful research tool for the construction of drug-like compounds to address challenging biological targets.

Indexed as

Models, ChemicalCell Line, TumorHEK293 CellsHeLa CellsHumansLeucine-tRNA LigaseMolecular StructureMonomeric GTP-Binding ProteinsProtein BindingProtein Interaction MapsPyrimidinesSmall Molecule LibrariesLeucine-tRNA LigaseMonomeric GTP-Binding ProteinsPyrimidinesRRAGD protein, humanSmall Molecule Libraries

Identifiers

PMID27774980
PMCPMC5078997

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.