Evidence map›Paper›PMID 27774276›Full record

ArticleVirus evolution2015

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed.

Denis Filloux, Sasha Murrell, Maneerat Koohapitagtam, Michael Golden, Charlotte Julian, Serge Galzi, Marilyne Uzest, Marguerite Rodier-Goud, Angélique D'Hont, Marie Stephanie Vernerey and 6 more

Open access · goldAbstract read
In one paragraph

Article in Virus evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Viruses of Yams (Viruses · 2022
    Review
  4. Article
  5. Genetic Diversity ofViruses · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 6 countries.

Denis FillouxCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.
Sasha MurrellComputational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town 4579, South Africa; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Maneerat KoohapitagtamCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France; Department of Pest Management, Faculty of Natural Resources, Prince of Songkla University, Hat Yai campus, Thailand 90120.
Michael GoldenComputational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town 4579, South Africa.
Charlotte JulianCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.
Serge GalziCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.
Marilyne UzestCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.
Marguerite Rodier-GoudCIRAD, UMR AGAP, TA A-108/03, Avenue Agropolis, F-34398 Montpellier Cedex 5, France.
Angélique D'HontCIRAD, UMR AGAP, TA A-108/03, Avenue Agropolis, F-34398 Montpellier Cedex 5, France.
Marie Stephanie VernereyCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.
Paul WilkinRoyal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK.
Michel PeterschmittCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.
Stephan WinterDSMZ Plant Virus Department, Messeweg 11/12, 38102, Braunschweig, Germany.
Ben MurrellComputational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town 4579, South Africa; Department of Medicine, University of California, San Diego, La Jolla, CA.
Darren P MartinComputational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town 4579, South Africa.
Philippe RoumagnacCIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRBiologie et Génétique des Interactions Plante-Parasite · FRInstitut Agro Montpellier · FRUniversity of Cape Town · ZAWellcome Centre for Infectious Diseases Research in Africa · ZALeibniz Association · DEPrince of Songkla University · THRoyal Botanic Gardens, Kew · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endogenous viral sequences are essentially 'fossil records' that can sometimes reveal the genomic features of long extinct virus species. Although numerous known instances exist of single-stranded DNA (ssDNA) genomes becoming stably integrated within the genomes of bacteria and animals, there remain very few examples of such integration events in plants. The best studied of these events are those which yielded the geminivirus-related DNA elements found within the nuclear genomes of various

Indexed as

endogenous viral sequencesfunctional protein expressiongeminivirusselection analysisyam

Identifiers

PMID27774276
PMCPMC5014472
OpenAlexW2412312029

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.