Evidence map›Paper›PMID 27770449›Full record

SynthesisClinical pharmacology and therapeutics2017

Polymorphic variation in TPMT is the principal determinant of TPMT phenotype: A meta-analysis of three genome-wide association studies.

R Tamm, R Mägi, R Tremmel, S Winter, E Mihailov, A Smid, A Möricke, K Klein, M Schrappe, M Stanulla and 7 more

Abstract readMeta-AnalysisReview
In one paragraph

Synthesis in Clinical pharmacology and therapeutics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Guideline
  2. Trial
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Can Pharmacogenetic Variants inInternational journal of molecular sciences · 2023
    Article
  10. Life science alliance · 2023
    Article
  11. Hepatic Expression of the NaInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. The Identification of a Novel Thiopurine S-Methyltransferase Allele,Pharmacogenomics and personalized medicine · 2020
    Article
  16. Impact of NUDT15 genetics on severe thiopurine-related hematotoxicity in patients with European ancestry.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  17. Review
  18. Ten years of Genome Medicine.Genome medicine · 2019
    Article
  19. Translational gastroenterology and hepatology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 5 countries.

R TammDepartment of Biotechnology, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
R MägiEstonian Genome Center, University of Tartu, Tartu, Estonia.
R TremmelDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany, and University of Tuebingen, Germany.
S WinterDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany, and University of Tuebingen, Germany.
E MihailovEstonian Genome Center, University of Tartu, Tartu, Estonia.
A SmidFaculty of Pharmacy, University of Ljubljana, Ljubljana, Slovenia.
A MörickeDepartment of Pediatrics, University Hospital Schleswig-Holstein, Kiel, Germany.
K KleinDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany, and University of Tuebingen, Germany.
M SchrappeDepartment of Pediatrics, University Hospital Schleswig-Holstein, Kiel, Germany.
M StanullaPediatric Hematology and Oncology, Hannover Medical School, Hannover, Germany.
R HoulstonDivision of Genetics and Epidemiology, Institute of Cancer Research, Sutton, UK.
R WeinshilboumDepartment of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota, USA.
Irena Mlinarič RaščanFaculty of Pharmacy, University of Ljubljana, Ljubljana, Slovenia.
A MetspaluDepartment of Biotechnology, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
L MilaniEstonian Genome Center, University of Tartu, Tartu, Estonia.
M SchwabDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany, and University of Tuebingen, Germany.
E SchaeffelerDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany, and University of Tuebingen, Germany.
Dr. Margarete Fischer-Bosch-Institute of Clinical Pharmacology · DEUniversity of Tartu · EEUniversity of Ljubljana · SIUniversity of Lübeck · DEInstitute of Cancer Research · GBMayo Clinic · USMedizinische Hochschule Hannover · DE

Funding

Pharmacogenetics of Phase II Drug Metabolizing EnzymesU19GM061388 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 2010 to 2014
$15.8M
INHERITED VARIATIONS IN DRUG-METABOLIZING ENZYMESR01GM028157 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 1985 to 2019
$6.9M
NIGMS NIH HHS R01 GM028157NIGMS NIH HHS U19 GM061388
6 · The paper itself

Abstract

Thiopurine-related hematotoxicity in pediatric acute lymphoblastic leukemia (ALL) and inflammatory bowel diseases has been linked to genetically defined variability in thiopurine S-methyltransferase (TPMT) activity. While gene testing of TPMT is being clinically implemented, it is unclear if additional genetic variation influences TPMT activity with consequences for thiopurine-related toxicity. To examine this possibility, we performed a genome-wide association study (GWAS) of red blood cell TPMT activity in 844 Estonian individuals and 245 pediatric ALL cases. Additionally, we correlated genome-wide genotypes to human hepatic TPMT activity in 123 samples. Only genetic variants mapping to chromosome 6, including the TPMT gene region, were significantly associated with TPMT activity (P < 5.0 × 10

Indexed as

Genome-Wide Association StudyAllelesEstoniaHumansMethyltransferasesPhenotypePolymorphism, GeneticMethyltransferasesthiopurine methyltransferase

Identifiers

PMID27770449
PMCPMC5395320
OpenAlexW2536297384

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.