Evidence map›Paper›PMID 27769163›Full record

ArticleBMC genomics2016

Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure.

Anne-Sophie Dumas, Ludivine Taconnat, Evangelos Barbas, Guillem Rigaill, Olivier Catrice, Delphine Bernard, Abdelilah Benamar, David Macherel, Abdelhak El Amrani, Richard Berthomé

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Molecular Defensive Mechanism ofInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Anne-Sophie DumasUniversité de Rennes 1, CNRS/OSUR/UMR 6553, Ecosystèmes-Biodiversité-Evolution, campus de Beaulieu, Bâtiment 14A, 35042, Rennes cedex, France.
Ludivine TaconnatInstitute of Plant Sciences Paris Saclay (IPS2), UMR 9213/UMR1403, Université Paris Sud, CNRS, INRA, Université d'Evry, Université Paris Diderot, Sorbonne Paris Cité, Bâtiment 630, 91405, Orsay, France.
Evangelos BarbasInstitute of Plant Sciences Paris Saclay (IPS2), UMR 9213/UMR1403, Université Paris Sud, CNRS, INRA, Université d'Evry, Université Paris Diderot, Sorbonne Paris Cité, Bâtiment 630, 91405, Orsay, France.
Guillem RigaillInstitute of Plant Sciences Paris Saclay (IPS2), UMR 9213/UMR1403, Université Paris Sud, CNRS, INRA, Université d'Evry, Université Paris Diderot, Sorbonne Paris Cité, Bâtiment 630, 91405, Orsay, France.
Olivier CatriceLaboratoire des Interactions Plantes Micro-organismes (LIPM), UMR INRA 441/CNRS 2594, CS 52627, 31326, Castanet Tolosan cedex, France.
Delphine BernardUniversité de Rennes 1, CNRS/OSUR/UMR 6553, Ecosystèmes-Biodiversité-Evolution, campus de Beaulieu, Bâtiment 14A, 35042, Rennes cedex, France.
Abdelilah BenamarUniversité d'Angers, UMR 1345, Institut de Recherche en Horticulture et Semences (IRHS), Bat ARES, 16 Boulevard Lavoisier, 49045, Angers cedex, France.
David MacherelUniversité d'Angers, UMR 1345, Institut de Recherche en Horticulture et Semences (IRHS), Bat ARES, 16 Boulevard Lavoisier, 49045, Angers cedex, France.
Abdelhak El AmraniUniversité de Rennes 1, CNRS/OSUR/UMR 6553, Ecosystèmes-Biodiversité-Evolution, campus de Beaulieu, Bâtiment 14A, 35042, Rennes cedex, France. abdelhak.el-amrani@univ-rennes1.fr.
Richard BerthoméInstitute of Plant Sciences Paris Saclay (IPS2), UMR 9213/UMR1403, Université Paris Sud, CNRS, INRA, Université d'Evry, Université Paris Diderot, Sorbonne Paris Cité, Bâtiment 630, 91405, Orsay, France. richard.berthome@toulouse.inra.fr.ORCID 0000-0003-4781-6210
Centre National de la Recherche Scientifique · FRUniversité Paris-Sud · FRInstitut de Recherche en Horticulture et Semences · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHigher plants have to cope with increasing concentrations of pollutants of both natural and anthropogenic origin. Given their capacity to concentrate and metabolize various compounds including pollutants, plants can be used to treat environmental problems - a process called phytoremediation. However, the molecular mechanisms underlying the stabilization, the extraction, the accumulation and partial or complete degradation of pollutants by plants remain poorly understood.

resultsHere, we determined the molecular events involved in the early plant response to phenanthrene, used as a model of polycyclic aromatic hydrocarbons. A transcriptomic and a metabolic analysis strongly suggest that energy availability is the crucial limiting factor leading to high and rapid transcriptional reprogramming that can ultimately lead to death. We show that the accumulation of phenanthrene in leaves inhibits electron transfer and photosynthesis within a few minutes, probably disrupting energy transformation.

conclusionThis kinetic analysis improved the resolution of the transcriptome in the initial plant response to phenanthrene, identifying genes that are involved in primary processes set up to sense and detoxify this pollutant but also in molecular mechanisms used by the plant to cope with such harmful stress. The identification of first events involved in plant response to phenanthrene is a key step in the selection of candidates for further functional characterization, with the prospect of engineering efficient ecological detoxification systems for polycyclic aromatic hydrocarbons.

Indexed as

Cluster AnalysisDose-Response Relationship, DrugEnergy MetabolismEnvironmental PollutantsGene Expression Regulation, PlantPhenanthrenesPlant DevelopmentPlant Physiological PhenomenaTranscriptomeXenobioticsEnvironmental PollutantsphenanthrenePhenanthrenesXenobioticsAbiotic stressArabidopsisEnergy availabilityMetabolitesPhenanthrenePhytoremediationTranscriptomeXenome

Identifiers

PMID27769163
PMCPMC5073745
OpenAlexW2533442849

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.