Evidence map›Paper›PMID 27768895›Full record

ArticleCell2016

The Structure of the Polycystic Kidney Disease Channel PKD2 in Lipid Nanodiscs.

Peter S Shen, Xiaoyong Yang, Paul G DeCaen, Xiaowen Liu, David Bulkley, David E Clapham, Erhu Cao

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 150 papers.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed
39.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

150 citing papers in PubMed, 259 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. A Ciliary Phosphoinositide Pathway Regulates the Dosage of Polycystins in Primary Cilia.Journal of the American Society of Nephrology : JASN · 2026
    Article
  6. Article
  7. AbioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Pathogenic variants in the polycystin pore helix cause distinct forms of channel dysfunction.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article

90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Peter S ShenDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84112-5650, USA.
Xiaoyong YangDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84112-5650, USA.
Paul G DeCaenDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Howard Hughes Medical Institute, Boston, 02115 MA, USA; Cardiology, Boston Children's Hospital, Boston, 02115 MA, USA; Neurobiology, Harvard Medical School, Boston, MA 02115, USA.
Xiaowen LiuHoward Hughes Medical Institute, Boston, 02115 MA, USA; Cardiology, Boston Children's Hospital, Boston, 02115 MA, USA; Neurobiology, Harvard Medical School, Boston, MA 02115, USA.
David BulkleyKeck Advanced Microscopy Laboratory and Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94143, USA.
David E ClaphamHoward Hughes Medical Institute, Boston, 02115 MA, USA; Cardiology, Boston Children's Hospital, Boston, 02115 MA, USA; Neurobiology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: dclapham@enders.tch.harvard.edu.
Erhu CaoDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84112-5650, USA. Electronic address: erhu.cao@biochem.utah.edu.
Boston Children's Hospital · USUniversity of Utah · USUniversity of California, San Francisco · US

Funding

RESEARCH METHODS IN PEDIATRICS HEART DISEASET32HL007572 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI Sarah D DE FERRANTI, Jane W. Newburger · 1985 to 2026
$13.0M
Research BaseP30DK090868 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI WATNICK, TERRY J · 2010 to 2019
$11.1M
Structures and Mechanisms of Polycystic Kidney Disease ProteinsR01DK110575 · NIDDK · UNIVERSITY OF UTAH · PI CAO, ERHU · 2016 to 2020
$1.8M
Transcriptional control in brown and beige adipocytesR01DK105175 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WANG, BIAO · 2015 to 2019
$1.8M
NHLBI NIH HHS T32 HL007572NIDDK NIH HHS P30 DK090868NIDDK NIH HHS R01 DK105175NIDDK NIH HHS R01 DK110575
6 · The paper itself

Abstract

The Polycystic Kidney Disease 2 (Pkd2) gene is mutated in autosomal dominant polycystic kidney disease (ADPKD), one of the most common human monogenic disorders. Here, we present the cryo-EM structure of PKD2 in lipid bilayers at 3.0 Å resolution, which establishes PKD2 as a homotetrameric ion channel and provides insight into potential mechanisms for its activation. The PKD2 voltage-sensor domain retains two of four gating charges commonly found in those of voltage-gated ion channels. The PKD2 ion permeation pathway is constricted at the selectivity filter and near the cytoplasmic end of S6, suggesting that two gates regulate ion conduction. The extracellular domain of PKD2, a hotspot for ADPKD pathogenic mutations, contributes to channel assembly and strategically interacts with the transmembrane core, likely serving as a physical substrate for extracellular stimuli to allosterically gate the channel. Finally, our structure establishes the molecular basis for the majority of pathogenic mutations in Pkd2-related ADPKD.

Indexed as

Amino Acid SequenceAnimalsCHO CellsCricetulusCryoelectron MicroscopyHEK293 CellsHumansLipid BilayersMutation, MissenseNanostructuresPolycystic Kidney, Autosomal DominantProtein Conformation, alpha-HelicalProtein DomainsTRPP Cation ChannelsLipid BilayersTRPP Cation ChannelsADPKDcryo-EMion channelPKD2polycystic kidney diseasepolycystinsingle particle electron cryo-microscopyTRP channelTRPP2

Identifiers

PMID27768895
PMCPMC6055481
OpenAlexW2532016379

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.