Evidence map›Paper›PMID 27768594›Full record

ArticleOncotarget2016

Hepatitis B virus X protein influences enrichment profiles of H3K9me3 on promoter regions in human hepatoma cell lines.

Di-Yi Wang, Shu-Hong An, Lei Liu, Shan-Shan Bai, Kai-Xiang Wu, Rong Zhu, Zhao-Jin Wang

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Di-Yi WangDepartment of Pathology, Affiliated Hospital of Taishan Medical University, Taian 271000, China.
Shu-Hong AnDepartment of Human Anatomy, Taishan Medical University, Taian, 271000, China.
Lei LiuDepartment of Pathology, Affiliated Hospital of Taishan Medical University, Taian 271000, China.
Shan-Shan BaiDepartment of Pathology, The First people's Hospital of Taian, Taian, 271000, China.
Kai-Xiang WuDepartment of Pathology, Affiliated Hospital of Taishan Medical University, Taian 271000, China.
Rong ZhuDepartment of Pathology, Shanghai Medical College, Fudan University, Shanghai 200032, China.
Zhao-Jin WangDepartment of Human Anatomy, Taishan Medical University, Taian, 271000, China.
Taishan Medical University · CNAffiliated Hospital of Taishan Medical University · CNShanghai Medical College of Fudan University · CNTaizhou First People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We previously showed that hepatitis B virus (HBV) X protein (HBx) could promote the trimethylation of histone H3 lysine 9 (H3K9me3) to repress tumor suppressor genes in hepatocellular carcinoma (HCC). In this work, we analyze 23,148 human promoters using ChIP-chip to determine the effects of HBx on H3K9me3 enrichments in hepatoma cells with transfection of HBx-expressing plasmid. Immunohistochemistry for HBx and H3K9me3 was performed in 21 cases of HBV-associated HCC tissues. We identified that H3K9me3 immunoreactivity was significantly correlated with HBx staining in HCC tissues. ChIP-chip data indicated that HBx remarkably altered promoter enrichments of H3K9me3 in hepatoma cells. We identified 25 gene promoters, whose H3K9me3 enrichments are significantly altered in hepatoma cells transfected HBx-expressing plasmid, including 19 gaining H3K9m3, and six losing this mark. Most of these genes have not been previously reported in HCC, and BTBD17, MIR6089, ZNF205-AS1 and ZP1 have not previously been linked to cancer; only two genes (DAB2IP and ZNF185) have been reported in HCC. Genomic analyses suggested that genes with the differential H3K9me3 enrichments function in diverse cellular pathways and many are involved in cancer development and progression.

Indexed as

CarcinogenesisCarcinoma, HepatocellularEpigenetic RepressionGene Expression ProfilingGene Expression Regulation, NeoplasticHepatitis BHepatitis B virusHep G2 CellsHistonesHumansLiver NeoplasmsMethylationPromoter Regions, GeneticTrans-ActivatorsViral Regulatory and Accessory Proteinshepatitis B virus X proteinHistonesTrans-ActivatorsViral Regulatory and Accessory Proteinsgene promotershepatitis B virus X proteinhepatocellular carcinomahistone H3 lysine 9 trimethylation

Identifiers

PMID27768594
PMCPMC5356706
OpenAlexW2536846436

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.