Evidence map›Paper›PMID 27768053›Full record

ArticleJournal of visualized experiments : JoVE2016

An Alternative Approach for Sample Preparation with Low Cell Number for TEM Analysis.

Sachin Kumar, Marie-Dominique Filippi

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Three-Dimensional Imaging in Stem Cell-Based Researches.Frontiers in veterinary science · 2021
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Sachin KumarDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Research Foundation; Sachin.kumar@cchmc.org.
Marie-Dominique FilippiDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Research Foundation; Marie-Dominique.Filippi@cchmc.org.
Hospital Research Foundation · AU

Funding

Regulation of hematopoietic stem cell self-renewal by GTPase activating protein signalingR01DK102890 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI FILIPPI, MARIE-DOMINIQUE, MALIK, PUNAM · 2015 to 2018
$1.7M
Molecular Regulation of Neutrophil Transcellular Migration'R01GM112792 · NIGMS · CINCINNATI CHILDRENS HOSP MED CTR · PI FILIPPI, MARIE-DOMINIQUE · 2015 to 2018
$1.2M
NIDDK NIH HHS R01 DK102890NIGMS NIH HHS R01 GM112792
6 · The paper itself

Abstract

Transmission electron microscopy (TEM) provides details of the cellular organization and ultrastructure. However, TEM analysis of rare cell populations, especially cells in suspension such as hematopoietic stem cells (HSCs), remains limited due to the requirement of a high cell number during sample preparation. There are a few cytospin or monolayer approaches for TEM analysis from scarce samples, but these approaches fail to get significant quantitative data from the limited number of cells. Here, an alternative and novel approach for sample preparation in TEM studies is described for rare cell populations that enables quantitative analysis. A relatively low cell number, i.e., 10,000 HSCs, was successfully used for TEM analysis compared to the millions of cells typically used for TEM studies. In particular, Evans blue staining was performed after paraformaldehyde-glutaraldehyde (PFA-GA) fixation to visualize the tiny cell pellet, which facilitated embedding in agarose. Clusters of numerous cells were observed in ultra-thin sections. The cells had a well preserved morphology, and the ultra-structural details of the Golgi complex and several mitochondria were visible. This efficient, easy and reproducible protocol allows sample preparation from a low cell number and can be used for qualitative and quantitative TEM analysis on rare cell populations from limited biological samples.

Indexed as

Cell CountMicroscopy, Electron, TransmissionSpecimen HandlingHematopoietic Stem CellsMicrotomyStaining and Labeling

Identifiers

PMID27768053
PMCPMC5092190
OpenAlexW2531837315

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.