Evidence map›Paper›PMID 27767379›Full record

ArticleEpigenetics2017

Identification and characterization of PKF118-310 as a KDM4A inhibitor.

Gianluigi Franci, Federica Sarno, Angela Nebbioso, Lucia Altucci

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Advances in pathogenesis of preeclampsia.Archives of gynecology and obstetrics · 2024
    Pooled it
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  14. Toxoflavin Produced byApplied and environmental microbiology · 2019
    Article
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  19. 3-Chloro-Frontiers in pharmacology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Gianluigi Francia Dipartimento di Biochimica , Biofisica e Patologia Generale, Seconda Università degli Studi di Napoli , Napoli , Italy.
Federica Sarnoa Dipartimento di Biochimica , Biofisica e Patologia Generale, Seconda Università degli Studi di Napoli , Napoli , Italy.
Angela Nebbiosoa Dipartimento di Biochimica , Biofisica e Patologia Generale, Seconda Università degli Studi di Napoli , Napoli , Italy.
Lucia Altuccia Dipartimento di Biochimica , Biofisica e Patologia Generale, Seconda Università degli Studi di Napoli , Napoli , Italy.
University of Naples Federico II · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic modifications are functionally involved in gene expression regulation. In particular, histone posttranslational modifications play a crucial role in functional chromatin organization. Several drugs able to inhibit or stimulate some families of proteins involved in epigenetic histone regulation have been found, a number of which are FDA-approved for the treatment of cutaneous T-cell lymphoma or are in phase I/II/III clinical trials for solid tumors. Although some protein families, such as histone deacetylases and their inhibitors, are well characterized, our understanding of histone lysine demethylases is still incomplete. We describe the in silico, in vitro, and cell-based characterization of the compound PKF118-310, an antagonist of transcription factor 4 (TCF4)/β-catenin signaling, as inhibitor of KDM4A. PKF118-310 potential inhibitor activity was discovered via virtual screening on the crystal structure of KDM4A. A peptide-based histone trimethylation assay developed in-house confirmed its potent KDM4A inhibitor activity. Its protein target was identified by cellular thermal shift assay experiments. PKF118-310 anticancer activity was observed in both liquid and solid tumor cells, and shown to have a dose- and time-dependent effect. We demonstrate the previously unreported inhibitory action of PKF118-310 on KDM4A. Our findings open up the possibility of developing the first KDM4A-specific inhibitors and derivatives.

Indexed as

Epigenesis, GeneticApoptosisbeta CateninCell ProliferationColorectal NeoplasmsGene Expression Regulation, NeoplasticHCT116 CellsHistonesHumansJumonji Domain-Containing Histone DemethylasesMolecular Docking SimulationPyrimidinonesTriazinesbeta CateninHistonesJumonji Domain-Containing Histone DemethylasesKDM4A protein, humanPKF118-310PyrimidinonesTriazinesCancerdemethylaseepigeneticsinhibitorsJMJKDM4APKF118-310screening

Identifiers

PMID27767379
PMCPMC5406213
OpenAlexW2536112707

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.