Evidence map›Paper›PMID 27767091›Full record

ArticleScientific reports2016

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment.

Christian Weber, Mikael Koutero, Marie-Agnes Dillies, Hugo Varet, Cesar Lopez-Camarillo, Jean Yves Coppée, Chung-Chau Hon, Nancy Guillén

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

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  9. Diversity and Plasticity of Virulent Characteristics ofTropical medicine and infectious disease · 2023
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  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Christian WeberInstitut Pasteur, Cell Biology of Parasitism Unit, F-75015 Paris, France.
Mikael KouteroInstitut Pasteur, Transcriptome and EpiGenome, BioMics, Center for Innovation and Technological Research, F-75015, Paris, France.
Marie-Agnes DilliesInstitut Pasteur, Transcriptome and EpiGenome, BioMics, Center for Innovation and Technological Research, F-75015, Paris, France.
Hugo VaretInstitut Pasteur, Transcriptome and EpiGenome, BioMics, Center for Innovation and Technological Research, F-75015, Paris, France.
Cesar Lopez-CamarilloUniversidad Autonoma de la Ciudad de Mexico, Genomics Sciences Program, Mexico City, Mexico.
Jean Yves CoppéeInstitut Pasteur, Transcriptome and EpiGenome, BioMics, Center for Innovation and Technological Research, F-75015, Paris, France.
Chung-Chau HonInstitut Pasteur, Cell Biology of Parasitism Unit, F-75015 Paris, France.
Nancy GuillénInstitut Pasteur, Cell Biology of Parasitism Unit, F-75015 Paris, France.
Institut Pasteur · FRUniversidad Autónoma de la Ciudad de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amoebiasis is a human infectious disease due to the amoeba parasite Entamoeba histolytica. The disease appears in only 20% of the infections. Diversity in phenotypes may occur within the same infectious strain in the gut; for instance, parasites can be commensal (in the intestinal lumen) or pathogenic (inside the tissue). The degree of pathogenesis of clinical isolates varies greatly. These findings raise the hypothesis that genetic derivation may account for amoebic diverse phenotypes. The main goal of this study was to analyse gene expression changes of a single virulent amoebic strain in different environmental contexts where it exhibit different degrees of virulence, namely isolated from humans and maintained through animal liver passages, in contact with the human colon and short or prolonged in vitro culture. The study reveals major transcriptome changes in virulent parasites upon contact with human colon explants, including genes related to sugar metabolism, cytoskeleton rearrangement, stress responses and DNA repair. Furthermore, in long-term cultured parasites, drastic changes in gene expression for proteins with functions for proteasome and tRNA activities were found. Globally we conclude that rapid changes in gene expression rather than genetic derivation can sustain the invasive phenotype of a single virulent isolate of E. histolytica.

Indexed as

TranscriptomeAnimalsColonCricetinaeDown-RegulationEntamoeba histolyticaGene Expression ProfilingHumansLiverMalePhenotypeRNA, ProtozoanSequence Analysis, RNAUp-RegulationVirulenceRNA, Protozoan

Identifiers

PMID27767091
PMCPMC5073345
OpenAlexW2535950467

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.