Evidence map›Paper›PMID 27766943›Full record

ArticleBMC bioinformatics2016

Successful classification of cocaine dependence using brain imaging: a generalizable machine learning approach.

Mutlu Mete, Unal Sakoglu, Jeffrey S Spence, Michael D Devous, Thomas S Harris, Bryon Adinoff

Open access · goldAbstract read
In one paragraph

Article in BMC bioinformatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
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  5. Invasive Computational Psychiatry.Biological psychiatry · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Mutlu MeteDepartment of Computer Science and Information Systems, Texas A&M University-Commerce, Commerce, TX, USA. Mutlu.Mete@tamuc.edu.
Unal SakogluComputer Engineering, University of Houston - Clear Lake, Houston, TX, USA.
Jeffrey S SpenceCenter for Brain Health, University of Texas at Dallas, Richardson, TX, USA.
Michael D DevousDepartment of Neurology, UT Southwestern Medical Center, Dallas, TX, USA.
Thomas S HarrisAvid Radiopharmaceuticals, Philadelphia, PA, USA.
Bryon AdinoffVeterans Affairs North Texas Health Care System, Dallas, TX, USA.
Texas A&M University – Commerce · USThe University of Texas at Dallas · USThe University of Texas Southwestern Medical Center · USUniversity of Houston - Clear Lake · USVA North Texas Health Care System · US

Funding

UT Southwestern Center for Translational Medicine (UL1/KL2/TL1)UL1TR001105 · NCATS · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2013 to 2017
$24.5M
UT-Southwestern Clinical and Translational Alliance for Research (UT-STAR) (TL1)UL1TR000451 · NCATS · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2012 to 2012
$6.3M
Impulsivity, Neural Deficits, and Cocaine RelapseR01DA023203 · NIDA · UT SOUTHWESTERN MEDICAL CENTER · PI ADINOFF, BRYON H. · 2007 to 2011
$1.5M
LIMBIC SENSITIVITY IN COCAINE ADDICTIONR01DA011434 · NIDA · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI ADINOFF, BRYON H · 1998 to 2005
$1.5M
Independent Component Analysis Based Support Vector Machine Classification MethodR03DA031292 · NIDA · EAST TEXAS A&M UNIVERSITY · PI METE, MUTLU · 2011 to 2011
$133k
NCATS NIH HHS UL1 TR000451NCATS NIH HHS UL1 TR001105NIDA NIH HHS R01 DA011434NIDA NIH HHS R01 DA023203NIDA NIH HHS R03 DA031292
6 · The paper itself

Abstract

backgroundNeuroimaging studies have yielded significant advances in the understanding of neural processes relevant to the development and persistence of addiction. However, these advances have not explored extensively for diagnostic accuracy in human subjects. The aim of this study was to develop a statistical approach, using a machine learning framework, to correctly classify brain images of cocaine-dependent participants and healthy controls. In this study, a framework suitable for educing potential brain regions that differed between the two groups was developed and implemented. Single Photon Emission Computerized Tomography (SPECT) images obtained during rest or a saline infusion in three cohorts of 2-4 week abstinent cocaine-dependent participants (n = 93) and healthy controls (n = 69) were used to develop a classification model. An information theoretic-based feature selection algorithm was first conducted to reduce the number of voxels. A density-based clustering algorithm was then used to form spatially connected voxel clouds in three-dimensional space. A statistical classifier, Support Vectors Machine (SVM), was then used for participant classification. Statistically insignificant voxels of spatially connected brain regions were removed iteratively and classification accuracy was reported through the iterations.

resultsThe voxel-based analysis identified 1,500 spatially connected voxels in 30 distinct clusters after a grid search in SVM parameters. Participants were successfully classified with 0.88 and 0.89 F-measure accuracies in 10-fold cross validation (10xCV) and leave-one-out (LOO) approaches, respectively. Sensitivity and specificity were 0.90 and 0.89 for LOO; 0.83 and 0.83 for 10xCV. Many of the 30 selected clusters are highly relevant to the addictive process, including regions relevant to cognitive control, default mode network related self-referential thought, behavioral inhibition, and contextual memories. Relative hyperactivity and hypoactivity of regional cerebral blood flow in brain regions in cocaine-dependent participants are presented with corresponding level of significance.

conclusionsThe SVM-based approach successfully classified cocaine-dependent and healthy control participants using voxels selected with information theoretic-based and statistical methods from participants' SPECT data. The regions found in this study align with brain regions reported in the literature. These findings support the future use of brain imaging and SVM-based classifier in the diagnosis of substance use disorders and furthering an understanding of their underlying pathology.

Indexed as

AlgorithmsSupport Vector MachineAdultBrainCluster AnalysisCocaine-Related DisordersFemaleHumansMaleMiddle AgedNeuroimagingSensitivity and SpecificityYoung AdultClassificationCocaine dependenceMachine learningSubstance use disordersSupport vector machines

Identifiers

PMID27766943
PMCPMC5073995
OpenAlexW2529404907

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.