Evidence map›Paper›PMID 27764206›Full record

ArticlePloS one2016

Molecular Characterization of a Novel Bovine Viral Diarrhea Virus Isolate SD-15.

Lisai Zhu, Haibing Lu, Yufeng Cao, Xiaochun Gai, Changming Guo, Yajing Liu, Jiaxu Liu, Xinping Wang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular characteristics of a potentially novel BVDV (Frontiers in veterinary science · 2025
    Article
  4. Open veterinary journal · 2023
    Article
  5. Article
  6. Detection of emerging HoBi-likeFrontiers in microbiology · 2023
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Lisai ZhuCollege of Veterinary Medicine at Jilin University, Changchun, China 130062.
Haibing LuCollege of Veterinary Medicine at Jilin University, Changchun, China 130062.
Yufeng CaoCollege of Veterinary Medicine at Jilin University, Changchun, China 130062.
Xiaochun GaiCollege of Veterinary Medicine at Jilin University, Changchun, China 130062.
Changming GuoCollege of Veterinary Medicine at Jilin University, Changchun, China 130062.
Yajing LiuCollege of Veterinary Medicine at Jilin University, Changchun, China 130062.
Jiaxu LiuGuangdong Haid Animal Husbandry and Veterinary Institute, Guangzhou, China 511400.
Xinping WangCollege of Veterinary Medicine at Jilin University, Changchun, China 130062.
Jilin University · CNChangchun Institute of Biological Products · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As one of the major pathogens, bovine viral diarrhea virus caused a significant economic loss to the livestock industry worldwide. Although BVDV infections have increasingly been reported in China in recent years, the molecular aspects of those BVDV strains were barely characterized. In this study, we reported the identification and characterization of a novel BVDV isolate designated as SD-15 from cattle, which is associated with an outbreak characterized by severe hemorrhagic and mucous diarrhea with high morbidity and mortality in Shandong, China. SD-15 was revealed to be a noncytopathic BVDV, and has a complete genomic sequence of 12,285 nucleotides that contains a large open reading frame encoding 3900 amino acids. Alignment analysis showed that SD-15 has 93.8% nucleotide sequence identity with BVDV ZM-95 isolate, a previous BVDV strain isolated from pigs manifesting clinical signs and lesions resembling to classical swine fever. Phylogenetic analysis clustered SD-15 to a BVDV-1m subgenotype. Analysis of the deduced amino acid sequence of glycoproteins revealed that E2 has several highly conserved and variable regions within BVDV-1 genotypes. An additional N-glycosylation site (240NTT) was revealed exclusively in SD-15-encoded E2 in addition to four potential glycosylation sites (Asn-X-Ser/Thr) shared by all BVDV-1 genotypes. Furthermore, unique amino acid and linear epitope mutations were revealed in SD-15-encoded Erns glycoprotein compared with known BVDV-1 genotype. In conclusion, we have isolated a noncytopathic BVDV-1m strain that is associated with a disease characterized by high morbidity and mortality, revealed the complete genome sequence of the first BVDV-1m virus originated from cattle, and found a unique glycosylation site in E2 and a linear epitope mutation in Erns encoded by SD-15 strain. Those results will broaden the current understanding of BVDV infection and lay a basis for future investigation on SD-15-related pathogenesis.

Indexed as

Genome, ViralAnimalsBovine Virus Diarrhea-Mucosal DiseaseCattleCattle DiseasesChinaDiarrhea Viruses, Bovine ViralGenome SizeHemorrhagic Syndrome, BovineOpen Reading FramesPhylogenySequence Analysis, RNA

Identifiers

PMID27764206
PMCPMC5072660
OpenAlexW2538757441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.