Evidence map›Paper›PMID 27763806›Full record

ArticleVirulence2017

RNAseq reveals hypervirulence-specific host responses to M. tuberculosis infection.

Gina Leisching, Ray-Dean Pietersen, Carel van Heerden, Paul van Helden, Ian Wiid, Bienyameen Baker

Open access · goldAbstract read
In one paragraph

Article in Virulence, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Lung epithelial injury impairs early host immune responses to Mycobacterium tuberculosis.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Dual RNA Sequencing ofInternational journal of molecular sciences · 2022
    Article
  8. Gadd45 Proteins in Immunity 2.0.Advances in experimental medicine and biology · 2022
    Article
  9. Article
  10. Polymorphisms in interferon pathway genes and risk of Mycobacterium tuberculosis infection in contacts of tuberculosis cases in Brazil.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
    Article
  11. Article
  12. Article
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  16. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Gina Leischinga SA MRC Center for TB Research , DST/NRF Center of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University , Tygerberg , South Africa.ORCID 0000-0002-4764-4781
Ray-Dean Pietersena SA MRC Center for TB Research , DST/NRF Center of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University , Tygerberg , South Africa.
Carel van Heerdenb Central Analytical Facility (CAF) , DNA Sequencing Unit, Stellenbosch University , Stellenbosch , South Africa.
Paul van Heldena SA MRC Center for TB Research , DST/NRF Center of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University , Tygerberg , South Africa.
Ian Wiida SA MRC Center for TB Research , DST/NRF Center of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University , Tygerberg , South Africa.
Bienyameen Bakera SA MRC Center for TB Research , DST/NRF Center of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University , Tygerberg , South Africa.
South African Medical Research Council · ZAStellenbosch University · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The distinguishing factors that characterize the host response to infection with virulent Mycobacterium tuberculosis (M.tb) are largely confounding. We present an infection study with 2 genetically closely related M.tb strains that have vastly different pathogenic characteristics. The early host response to infection with these detergent-free cultured strains was analyzed through RNAseq in an attempt to provide information on the subtleties which may ultimately contribute to the virulent phenotype. Murine bone marrow derived macrophages (BMDMs) were infected with either a hyper- (R5527) or hypovirulent (R1507) Beijing M. tuberculosis clinical isolate. RNAseq revealed 69 differentially expressed host genes in BMDMs during comparison of these 2 transcriptomes. Pathway analysis revealed activation of the stress-induced and growth inhibitory Gadd45 signaling pathway in hypervirulent infected BMDMs. Upstream regulators of interferon activation such as and IRF3 and IRF7 were predicted to be upregulated in hypovirulent-infected BMDMs. Additional analysis of the host immune response through ELISA and qPCR included the use of human THP-1 macrophages where a robust proinflammatory response was observed after infection with the hypervirulent strain. RNAseq revealed 2 early-response genes (ier3 and saa3) and 2 host-defense genes (oasl1 and slpi) that were significantly upregulated by the hypervirulent strain. The role of these genes under M.tb infection conditions are largely unknown but here we provide validation of their presence with use of qPCR and Western blot. Further analysis into their biological role during infection with virulent M.tb is required.

Indexed as

Host-Pathogen InteractionsAnimalsBlotting, WesternCell Cycle ProteinsGADD45 ProteinsGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansInterferon Regulatory Factor-3Interferon Regulatory Factor-7MacrophagesMiceMycobacterium tuberculosisNuclear ProteinsReal-Time Polymerase Chain ReactionSignal TransductionCell Cycle ProteinsGadd45a protein, mouseGADD45 ProteinsInterferon Regulatory Factor-3Interferon Regulatory Factor-7Irf3 protein, mouseIrf7 protein, mouseNuclear Proteinshost-responseinfectionmycobacterium tuberculosisRNAseqvirulence

Identifiers

PMID27763806
PMCPMC5626229
OpenAlexW2531989675

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.