Evidence map›Paper›PMID 27760122›Full record

ArticlePloS one2016

Tanscriptomic Study of the Soybean-Fusarium virguliforme Interaction Revealed a Novel Ankyrin-Repeat Containing Defense Gene, Expression of Whose during Infection Led to Enhanced Resistance to the Fungal Pathogen in Transgenic Soybean Plants.

Micheline N Ngaki, Bing Wang, Binod B Sahu, Subodh K Srivastava, Mohammad S Farooqi, Sekhar Kambakam, Sivakumar Swaminathan, Madan K Bhattacharyya

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  10. The Plant cell · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Micheline N NgakiDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.
Bing WangDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.
Binod B SahuDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.
Subodh K SrivastavaDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.
Mohammad S FarooqiDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.
Sekhar KambakamDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.
Sivakumar SwaminathanDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.
Madan K BhattacharyyaDepartment of Agronomy, Iowa State University, Ames, IA, United States of America.ORCID http://orcid.org/0000-0002-5639-9706
Iowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium virguliforme causes the serious disease sudden death syndrome (SDS) in soybean. Host resistance to this pathogen is partial and is encoded by a large number of quantitative trait loci, each conditioning small effects. Breeding SDS resistance is therefore challenging and identification of single-gene encoded novel resistance mechanisms is becoming a priority to fight this devastating this fungal pathogen. In this transcriptomic study we identified a few putative soybean defense genes, expression of which is suppressed during F. virguliforme infection. The F. virguliforme infection-suppressed genes were broadly classified into four major classes. The steady state transcript levels of many of these genes were suppressed to undetectable levels immediately following F. virguliforme infection. One of these classes contains two novel genes encoding ankyrin repeat-containing proteins. Expression of one of these genes, GmARP1, during F. virguliforme infection enhances SDS resistance among the transgenic soybean plants. Our data suggest that GmARP1 is a novel defense gene and the pathogen presumably suppress its expression to establish compatible interaction.

Indexed as

Ankyrin RepeatGene Expression ProfilingDisease ResistanceFusariumGlycine maxHost-Pathogen InteractionsPlant DiseasesPlant ProteinsPlant RootsPlants, Genetically ModifiedReproducibility of ResultsPlant Proteins

Identifiers

PMID27760122
PMCPMC5070833
OpenAlexW2533244830

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.