Evidence map›Paper›PMID 27759897›Full record

ArticleProtein science : a publication of the Protein Society2017

Effect of circular permutation on the structure and function of type 1 blue copper center in azurin.

Yang Yu, Igor D Petrik, Kelly N Chacón, Parisa Hosseinzadeh, Honghui Chen, Ninian J Blackburn, Yi Lu

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Circular permutation at azurin's active site slows down its folding.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
    Article
  3. CuChemical science · 2020
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Yang YuTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.ORCID 0000-0002-0784-9715
Igor D PetrikDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801.
Kelly N ChacónReed College, Portland, Oregon, 97202.
Parisa HosseinzadehDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801.
Honghui ChenTianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.
Ninian J BlackburnInstitute of Environmental Health, Oregon Health and Science University, Portland, Oregon, 97239.
Yi LuDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801.
University of Illinois Urbana-Champaign · USChinese Academy of Sciences · CNOregon Health & Science University · USReed College · USTianjin University of Science and Technology · CN

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
X-RAY SPECTROSCOPIC STUDIES ON HEME-COPPER OXIDASESR01GM054803 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI BLACKBURN, NINIAN J · 1997 to 2015
$3.2M
Tracking Metal Flux Through a Pathogenic Export ComplexR01GM123725 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI BLACKBURN, NINIAN J · 2017 to 2020
$1.5M
NIBIB NIH HHS P30 EB009998NIGMS NIH HHS R01 GM054803NIGMS NIH HHS R01 GM123725
6 · The paper itself

Abstract

Type 1 copper (T1Cu) proteins are electron transfer (ET) proteins involved in many important biological processes. While the effects of changing primary and secondary coordination spheres in the T1Cu ET function have been extensively studied, few report has explored the effect of the overall protein structural perturbation on active site configuration or reduction potential of the protein, even though the protein scaffold has been proposed to play a critical role in enforcing the entatic or "rack-induced" state for ET functions. We herein report circular permutation of azurin by linking the N- and C-termini and creating new termini in the loops between 1

Indexed as

AzurinCatalytic DomainCopperOxidation-ReductionProtein Structure, SecondaryStructure-Activity RelationshipAzurinCopperazurincircular permutationreduction potentialsecondary coordination sphere

Identifiers

PMID27759897
PMCPMC5275729
OpenAlexW2533212422

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.