Evidence map›Paper›PMID 27759212›Full record

ArticleBipolar disorders2016

Replication of genome-wide association study (GWAS) susceptibility loci in a Latino bipolar disorder cohort.

Suzanne Gonzalez, Jayanta Gupta, Erika Villa, Indika Mallawaarachchi, Marco Rodriguez, Mercedes Ramirez, Juan Zavala, Regina Armas, Albana Dassori, Javier Contreras and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Bipolar disorders, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

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  12. Association ofHereditas · 2019
    Article
  13. Review
  14. Genetic Variants Involved in Bipolar Disorder, a Rough Road Ahead.Clinical practice and epidemiology in mental health : CP & EMH · 2018
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 3 countries.

Suzanne GonzalezCenter of Excellence in Neurosciences, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX, USA. suzanne.gonzalez@ttuhsc.edu.
Jayanta GuptaDepartment of Health Sciences, College of Health Professions & Social Work, Florida Gulf Coast University, Fort Myers, FL, USA.
Erika VillaCenter of Excellence in Neurosciences, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX, USA.
Indika MallawaarachchiBiostatistics and Epidemiology Consulting Lab, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX, USA.
Marco RodriguezCenter of Excellence in Neurosciences, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX, USA.
Mercedes RamirezCenter of Excellence in Neurosciences, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX, USA.
Juan ZavalaCenter of Excellence in Neurosciences, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX, USA.
Regina ArmasLangley Porter Psychiatric Institute, University of California at San Francisco, San Francisco, CA, USA.
Albana DassoriDepartment of Psychiatry, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Javier ContrerasCentro de Investigación en Biología Celular y Molecular y Escuela de Biologia, Universidad de Costa Rica, San Jose, Costa Rica.
Deborah FloresLos Angeles Biomedical Research Center at Harbor, University of California Los Angeles Medical Center, Torrance, CA, USA.
Alvaro JerezCentro Internacional de Trastornos Afectivos y de la Conducta Adictiva, Guatemala City, Guatemala.
Alfonso OntiverosInstituto de Información e Investigación en Salud Mental AC, Monterrey, Nuevo Leon, México.
Humberto NicoliniGrupo de Estudios Médicos y Familiares Carracci S.C., México D.F, México.
Michael EscamillaCenter of Excellence in Neurosciences, Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, TX, USA.
Texas Tech University · USTexas Tech University Health Sciences Center · USFlorida Gulf Coast University · USLangley Porter Psychiatric Hospital and Clinics · USThe Lundquist Institute · USThe University of Texas at El Paso · USThe University of Texas Health Science Center at San Antonio · USUnidad de Cirugía Cardiovascular de Guatemala · GTUniversidad de Costa Rica · CR

Funding

Genetics of Bipolar Disorder in Latino PopulationsR01MH069856 · NIMH · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI ESCAMILLA, MICHAEL A · 2005 to 2009
$6.5M
GENETICS OF SCHIZOPHRENIA IN LATINO POPULATIONSR01MH060881 · NIMH · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI ESCAMILLA, MICHAEL A · 2000 to 2003
$2.1M
NIMH NIH HHS R01 MH060881NIMH NIH HHS R01 MH069856
6 · The paper itself

Abstract

objectivesRecent genome-wide association studies (GWASs) have identified numerous putative genetic polymorphisms associated with bipolar disorder (BD) and/or schizophrenia (SC). We hypothesized that a portion of these polymorphisms would also be associated with BD in the Latino American population. To identify such regions, we tested previously identified genetic variants associated with BD and/or SC and ancestral haploblocks containing these single nucleotide polymorphisms (SNPs) in a sample of Latino subjects with BD.

methodsA total of 2254 Latino individuals were genotyped for 91 SNPs identified in previous BD and/or SC GWASs, along with selected SNPs in strong linkage disequilibrium with these markers. Family-based single marker and haplotype association testing was performed using the PBAT software package. Empirical P-values were derived from 10 000 permutations.

resultsAssociations of eight a priori GWAS SNPs with BD were replicated with nominal (P≤.05) levels of significance. These included SNPs within nuclear factor I A (NFIA), serologically defined colon cancer antigen 8 (SDCCAG8), lysosomal associated membrane protein 3 (LAMP3), nuclear factor kappa B subunit 1 (NFKB1), major histocompatibility complex, class I, B (HLA-B) and 5'-nucleotidase, cytosolic II (NT5C2) and SNPs within intragenic regions microRNA 6828 (MIR6828)-solute carrier family 7 member 14 (SLC7A14) and sonic hedgehog (SHH)-long intergenic non-protein coding RNA 1006 (LINC01006). Of the 76 ancestral haploblocks that were tested for associations with BD, our top associated haploblock was located in LAMP3; however, the association did not meet statistical thresholds of significance following Bonferroni correction.

conclusionsThese results indicate that some of the gene variants found to be associated with BD or SC in other populations are also associated with BD risk in Latinos. Variants in six genes and two intragenic regions were associated with BD in our Latino sample and provide additional evidence for overlap in genetic risk between SC and BD.

Indexed as

Bipolar DisorderSchizophreniaAdultCosta RicaFemaleGenetic Predisposition to DiseaseGenetic TestingGenome-Wide Association StudyGuatemalaHaplotypesHispanic or LatinoHumansKruppel-Like Transcription FactorsLinkage DisequilibriumLysosomal-Associated Membrane Protein 3Lysosomal Membrane ProteinsKruppel-Like Transcription FactorsLAMP3 protein, humanLysosomal-Associated Membrane Protein 3Lysosomal Membrane ProteinsNeoplasm ProteinsNF-kappa B p50 SubunitNFKB1 protein, humanZNF804A protein, humanbipolar disorderCentral Americanfamily studiesgeneticsLatinoslysosomal associated membrane protein 3 (LAMP3)MexicanMexican-Americannuclear factor kappa B subunit 1 (NFKB1)serologically defined colon cancer antigen 8 (SDCCAG8)

Identifiers

PMID27759212
PMCPMC5095871
OpenAlexW2538146629

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.