Evidence map›Paper›PMID 27757719›Full record

ArticleBreast cancer research and treatment2016

Characterization of a novel germline PALB2 duplication in a hereditary breast and ovarian cancer family.

Ciyu Yang, Angela G Arnold, Magan Trottier, Yukio Sonoda, Nadeem R Abu-Rustum, Oliver Zivanovic, Mark E Robson, Zsofia K Stadler, Michael F Walsh, David M Hyman and 2 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Breast cancer research and treatment, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Identification and Characterization of an Exonic Duplication inInternational journal of molecular sciences · 2022
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Ciyu YangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Angela G ArnoldDepartments of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Magan TrottierDepartments of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Yukio SonodaDepartments of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Nadeem R Abu-RustumDepartments of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Oliver ZivanovicDepartments of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Mark E RobsonDepartments of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Zsofia K StadlerDepartments of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Michael F WalshDepartments of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
David M HymanDepartments of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Kenneth OffitDepartments of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Liying ZhangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. zhangl2@mskcc.org.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

purposeMutations in PALB2 have been associated with a predisposition to breast and pancreatic cancers. This study aims to characterize a novel PALB2 exon 13 duplication in a hereditary breast and ovarian cancer family.

methodsThe PALB2 exon 13 duplication in this family was evaluated using Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT™) and confirmed by multiplex ligation-dependent probe amplification (MLPA). The duplication breakpoints were determined by long-range PCR and DNA sequencing. The effects of this mutation on mRNA splicing were characterized using RT-PCR, cloning, and DNA sequencing.

resultsThe 5' and 3' breakpoints were mapped to intron 12 and downstream of 3'UTR. The tandem duplication is mediated by Alu elements in these regions. This duplication disrupts normal mRNA splicing and presumably leads to a frameshift and premature protein truncation. This duplication segregates with ovarian and breast cancer in multiple members in this family.

conclusionsOur results indicate that the PALB2 exon 13 duplication is a pathogenic variant. The presence of the PALB2 duplication in the proband affected with high-grade serous ovarian cancer suggests that PALB2 might be associated with a predisposition to ovarian cancer.

Indexed as

Gene DuplicationGerm-Line MutationAlu ElementsBase SequenceChromosome BreakpointsExonsFanconi Anemia Complementation Group N ProteinFemaleHereditary Breast and Ovarian Cancer SyndromeHumansMiddle AgedNeoplasm GradingNeoplasm StagingPedigreeRNA SplicingTumor BurdenFanconi Anemia Complementation Group N ProteinPALB2 protein, humanBreast cancerDuplicationOvarian cancerPALB2Pathogenic

Identifiers

PMID27757719
PMCPMC5646170
OpenAlexW2532686399

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.