Evidence map›Paper›PMID 27756845›Full record

ArticleThe Journal of biological chemistry2016

Oxidized Guanine Base Lesions Function in 8-Oxoguanine DNA Glycosylase-1-mediated Epigenetic Regulation of Nuclear Factor κB-driven Gene Expression.

Lang Pan, Bing Zhu, Wenjing Hao, Xianlu Zeng, Spiros A Vlahopoulos, Tapas K Hazra, Muralidhar L Hegde, Zsolt Radak, Attila Bacsi, Allan R Brasier and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 192 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. 8-Oxoguanine: A Lesion, an Epigenetic Mark, or a Molecular Signal?International journal of molecular sciences · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. OGG1 augments the transcriptional activation ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. COProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Lang PanFrom the Departments of Microbiology and Immunology and.
Bing ZhuFrom the Departments of Microbiology and Immunology and.ORCID http://orcid.org/0000-0002-8371-3182
Wenjing Haothe Key Laboratory of Molecular Epigenetics, Ministry of Education, Institute of Genetics and Cytology, Northeast Normal University, Changchun 130024, China, and.
Xianlu Zengthe Key Laboratory of Molecular Epigenetics, Ministry of Education, Institute of Genetics and Cytology, Northeast Normal University, Changchun 130024, China, and.ORCID http://orcid.org/0000-0002-2655-4197
Spiros A VlahopoulosFrom the Departments of Microbiology and Immunology and.ORCID http://orcid.org/0000-0001-6245-3863
Muralidhar L Hegdethe Department of Radiation Oncology and Neurology, Methodist Research Institute, Houston, Texas 77030.ORCID http://orcid.org/0000-0001-7333-8123
Zsolt RadakFrom the Departments of Microbiology and Immunology and.ORCID http://orcid.org/0000-0003-1297-6804
Attila BacsiFrom the Departments of Microbiology and Immunology and.ORCID http://orcid.org/0000-0002-2311-2975
Allan R BrasierMedicine, and.ORCID http://orcid.org/0000-0002-5012-4090
Xueqing BaFrom the Departments of Microbiology and Immunology and baxq755@nenu.edu.cn.
Istvan BoldoghFrom the Departments of Microbiology and Immunology and sboldogh@utmb.edu.ORCID http://orcid.org/0000-0002-0088-1130
Northeast Normal University · CNGalveston College · USCal Poly Humboldt · USHouston Methodist · US

Funding

Virus, Tissue Culture and ImmunoassayP01AI062885 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CASOLA, ANTONELLA · 2005 to 2022
$23.9M
Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
Etiological Linkage of DNA Damage/Repair Deficiency in Neurodegenerative DiseasesR01NS088645 · NINDS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI HEGDE, MURALIDHAR L · 2015 to 2019
$1.8M
Linkage of Lung Inflammation to 8-oxoguanine and OGG1R01ES018948 · NIEHS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BOLDOGH, ISTVAN STEVEN · 2010 to 2014
$1.5M
NIAID NIH HHS P01 AI062885NIEHS NIH HHS P30 ES006676NIEHS NIH HHS R01 ES018948NINDS NIH HHS R01 NS088645
6 · The paper itself

Abstract

A large percentage of redox-responsive gene promoters contain evolutionarily conserved guanine-rich clusters; guanines are the bases most susceptible to oxidative modification(s). Consequently, 7,8-dihydro-8-oxoguanine (8-oxoG) is one of the most abundant base lesions in promoters and is primarily repaired via the 8-oxoguanine DNA glycosylase-1 (OOG1)-initiated base excision repair pathway. In view of a prompt cellular response to oxidative challenge, we hypothesized that the 8-oxoG lesion and the cognate repair protein OGG1 are utilized in transcriptional gene activation. Here, we document TNFα-induced enrichment of both 8-oxoG and OGG1 in promoters of pro-inflammatory genes, which precedes interaction of NF-κB with its DNA-binding motif. OGG1 bound to 8-oxoG upstream from the NF-κB motif increased its DNA occupancy by promoting an on-rate of both homodimeric and heterodimeric forms of NF-κB. OGG1 depletion decreased both NF-κB binding and gene expression, whereas Nei-like glycosylase-1 and -2 had a marginal effect. These results are the first to document a novel paradigm wherein the DNA repair protein OGG1 bound to its substrate is coupled to DNA occupancy of NF-κB and functions in epigenetic regulation of gene expression.

Indexed as

Epigenesis, GeneticGene Expression Regulation, EnzymologicResponse ElementsAnimalsDNA GlycosylasesDNA RepairGuanineHEK293 CellsHumansMiceMice, KnockoutNF-kappa BTumor Necrosis Factor-alpha8-hydroxyguanineDNA GlycosylasesGuanineNF-kappa BOgg1 protein, mouseoxoguanine glycosylase 1, humanTumor Necrosis Factor-alpha8-oxoguanine (8-oxoG)8-oxoguanine glycosylase (OGG1)NF-κB transcription factorpromoterreactive oxygen species (ROS)

Identifiers

PMID27756845
PMCPMC5207254
OpenAlexW2538723608

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.