RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.

Juan Antonio Garcia-Martin, Amir H Bayegan, Ivan Dotu, Peter Clote

Abstract read

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Article in BMC bioinformatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed

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5 citing papers in PubMed.

The energy-spectrum of bicompatible sequences.Algorithms for molecular biology : AMB · 2021
Article
Genetic robustness of let-7 miRNA sequence-structure pairs.RNA (New York, N.Y.) · 2019
Article
Degeneracy and genetic assimilation in RNA evolution.BMC bioinformatics · 2018
Article
SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.PLoS computational biology · 2018
Article
Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation.Biology direct · 2017
Article

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4 authors.

Juan Antonio Garcia-MartinBiology Department, Boston College, 140 Commonwealth Avenue, Chestnut Hill, 02467, MA, USA.

Amir H BayeganBiology Department, Boston College, 140 Commonwealth Avenue, Chestnut Hill, 02467, MA, USA.

Ivan DotuResearch Programme on Biomedical Informatics (GRIB), Department of Experimental and Health Sciences, Universitat Pompeu Fabra, IMIM (Hospital del Mar Medical Research Institute), Dr. Aiguader, 88, Barcelona, Spain.

Peter CloteBiology Department, Boston College, 140 Commonwealth Avenue, Chestnut Hill, 02467, MA, USA. clote@bc.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRNA inverse folding is the problem of finding one or more sequences that fold into a user-specified target structure s

resultsWe introduce the program RNAdualPF, which computes the dual partition function Z

conclusionWe describe RNAdualPF, which rapidly computes the dual partition function Z

Indexed as

Evolution, MolecularSoftwareAlgorithmsAnimalsCaenorhabditis elegansComputational BiologyDatabases, FactualEscherichia coliMicroRNAsRNARNA FoldingRNA, Small NuclearSequence Analysis, RNAMicroRNAsRNARNA, Small NuclearBoltzmann ensemblePartition functionRNA secondary structureRobustness

Identifiers

PMID27756204

DOI10.1186/s12859-016-1280-6

PMCPMC5069997

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