Evidence map›Paper›PMID 27755609›Full record

ArticlePloS one2016

HOXB4 Gene Expression Is Regulated by CDX2 in Intestinal Epithelial Cells.

Steffen Jørgensen, Mehmet Coskun, Keld Mikkelsen Homburg, Ole B V Pedersen, Jesper T Troelsen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Steffen JørgensenDepartment of Science and Environment, Roskilde University, Roskilde, Denmark.
Mehmet CoskunDepartment of Gastroenterology, Medical Section, Herlev Hospital, University of Copenhagen, Copenhagen, Denmark.
Keld Mikkelsen HomburgDepartment of Clinical Immunology, Naestved Hospital, Naestved, Region Zealand, Denmark.
Ole B V PedersenDepartment of Clinical Immunology, Naestved Hospital, Naestved, Region Zealand, Denmark.
Jesper T TroelsenDepartment of Science and Environment, Roskilde University, Roskilde, Denmark.
Region Zealand · DKHerlev Hospital · DKNæstved Sygehus · DKRoskilde University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian Caudal-related homeobox transcription factor 2 (CDX2) plays a key role in the homeobox regulatory network and is essential in regulating the expression of several homeobox (HOX) genes during embryonic development, particularly in the gut. Genome-wide CDX2 chromatin immunoprecipitation analysis and expression data from Caco2 cells also suggests a role for CDX2 in the regulation of HOXB4 gene expression in the intestinal epithelium. Thus, the aim of this study was to investigate whether HOXB4 gene expression is regulated by CDX2 in the intestinal epithelium. We demonstrated binding of CDX2 to four different CDX2 binding sites in an enhancer region located upstream of the HOXB4 transcription start site. Mutations in the CDX2 binding sites reduced HOXB4 gene activity, and knock down of endogenous CDX2 expression by shRNA reduced HOXB4 gene expression. This is the first report demonstrating the CDX2 regulation of HOXB4 gene expression in the developed intestinal epithelium, indicating a possible role for HOXB4 in intestinal homeostasis.

Indexed as

Base SequenceBinding SitesCaco-2 CellsCDX2 Transcription FactorCell LineChromatin ImmunoprecipitationElectrophoretic Mobility Shift AssayEnhancer Elements, GeneticEpithelial CellsGene ExpressionGenes, ReporterHomeodomain ProteinsHumansIntestinesMolecular Sequence DataPromoter Regions, GeneticCDX2 protein, humanCDX2 Transcription FactorHomeodomain ProteinsHOXB4 protein, humanRNA, Small InterferingTranscription Factors

Identifiers

PMID27755609
PMCPMC5068786
OpenAlexW2533878402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.