Evidence map›Paper›PMID 27752127›Full record

ArticleScientific reports2016

Structural characterization of the circadian clock protein complex composed of KaiB and KaiC by inverse contrast-matching small-angle neutron scattering.

Masaaki Sugiyama, Hirokazu Yagi, Kentaro Ishii, Lionel Porcar, Anne Martel, Katsuaki Oyama, Masanori Noda, Yasuhiro Yunoki, Reiko Murakami, Rintaro Inoue and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Toward Nanodisc Tailoring for SANS Study of Membrane Proteins.Bioengineering (Basel, Switzerland) · 2026
    Article
  2. Article
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  5. Deuteration Aiming for Neutron Scattering.Biophysics and physicobiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Masaaki SugiyamaResearch Reactor Institute, Kyoto University, Kumatori, Sennan-gun, Osaka 590-0494, Japan.
Hirokazu YagiGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan.
Kentaro IshiiOkazaki Institute for Integrative Bioscience and 5-1 Higashiyama, Myodaiji, Okazaki, Aichi 444-8787, Japan.
Lionel PorcarInstitut Laue-Langevin, 71, Avenue des Martyrs, Grenoble 38042, France.
Anne MartelInstitut Laue-Langevin, 71, Avenue des Martyrs, Grenoble 38042, France.
Katsuaki OyamaGraduate School of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, Japan.
Masanori NodaDepartment of Biotechnology, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Yasuhiro YunokiGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan.
Reiko MurakamiGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan.
Rintaro InoueResearch Reactor Institute, Kyoto University, Kumatori, Sennan-gun, Osaka 590-0494, Japan.
Nobuhiro SatoResearch Reactor Institute, Kyoto University, Kumatori, Sennan-gun, Osaka 590-0494, Japan.
Yojiro ObaResearch Reactor Institute, Kyoto University, Kumatori, Sennan-gun, Osaka 590-0494, Japan.
Kazuki TerauchiGraduate School of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, Japan.
Susumu UchiyamaOkazaki Institute for Integrative Bioscience and 5-1 Higashiyama, Myodaiji, Okazaki, Aichi 444-8787, Japan.
Koichi KatoGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan.
Kyoto University · JPNagoya City University · JPInstitut Laue-Langevin · FROkazaki Institute for Integrative Bioscience · JPRitsumeikan University · JPInstitute for Molecular Science · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular machinery of the cyanobacterial circadian clock consists of three proteins: KaiA, KaiB, and KaiC. Through interactions among the three Kai proteins, the phosphorylation states of KaiC generate circadian oscillations in vitro in the presence of ATP. Here, we characterized the complex formation between KaiB and KaiC using a phospho-mimicking mutant of KaiC, which had an aspartate substitution at the Ser431 phosphorylation site and exhibited optimal binding to KaiB. Mass-spectrometric titration data showed that the proteins formed a complex exclusively in a 6:6 stoichiometry, indicating that KaiB bound to the KaiC hexamer with strong positive cooperativity. The inverse contrast-matching technique of small-angle neutron scattering enabled selective observation of KaiB in complex with the KaiC mutant with partial deuteration. It revealed a disk-shaped arrangement of the KaiB subunits on the outer surface of the KaiC C1 ring, which also serves as the interaction site for SasA, a histidine kinase that operates as a clock-output protein in the regulation of circadian transcription. These data suggest that cooperatively binding KaiB competes with SasA with respect to interaction with KaiC, thereby promoting the synergistic release of this clock-output protein from the circadian oscillator complex.

Indexed as

Bacterial ProteinsCircadian ClocksCircadian Rhythm Signaling Peptides and ProteinsCrystallography, X-RayMultiprotein ComplexesMutationPhosphorylationPhosphotransferasesProtein BindingProtein ConformationProtein MultimerizationScattering, Small AngleSynechococcusBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsKaiA protein, cyanobacteriaKaiB protein, cyanobacteriaKaiC protein, cyanobacteriaMultiprotein ComplexesPhosphotransferasesSasA protein, Synechococcus

Identifiers

PMID27752127
PMCPMC5067715
OpenAlexW2536167964

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.