Evidence map›Paper›PMID 27751910›Full record

ArticleFree radical biology & medicine2016

Transcriptome profiling of equine vitamin E deficient neuroaxonal dystrophy identifies upregulation of liver X receptor target genes.

Carrie J Finno, Matthew H Bordbari, Stephanie J Valberg, David Lee, Josi Herron, Kelly Hines, Tamer Monsour, Erica Scott, Danika L Bannasch, James Mickelson and 1 more

Open access · greenAbstract read
In one paragraph

Article in Free radical biology & medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Effect of clodronate on gene expression in the peripheral blood of horses.Journal of veterinary pharmacology and therapeutics · 2024
    Article
  3. Article
  4. Article
  5. Oxidized LDLs as Signaling Molecules.Antioxidants (Basel, Switzerland) · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Carrie J FinnoDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA 95616, United States. Electronic address: cjfinno@ucdavis.edu.
Matthew H BordbariDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA 95616, United States.
Stephanie J ValbergDepartment of Large Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, United States.
David LeeDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, United States.
Josi HerronDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, United States.
Kelly HinesDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, United States.
Tamer MonsourDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA 95616, United States.
Erica ScottDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA 95616, United States.
Danika L BannaschDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA 95616, United States.
James MickelsonDepartment of Veterinary and Biomedical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN 55108, United States.
Libin XuDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, United States.
University of California, Davis · USUniversity of Washington · USMichigan State University · USUniversity of Minnesota · US

Funding

Environmetal Pathology/Toxicology Training ProgramT32ES007032 · NIEHS · UNIVERSITY OF WASHINGTON · PI FAUSTMAN, ELAINE M, ROSENFELD, MICHAEL E · 1985 to 2023
$10.7M
7-Dehydrocholesterol-derived oxysterols in SLOS: role and therapyR00HD073270 · NICHD · UNIVERSITY OF WASHINGTON · PI XU, LIBIN · 2015 to 2017
$745k
Molecular pathogenesis of alpha-tocopherol associated neuroaxonal dystrophy in anK01OD015134 · OD · UNIVERSITY OF MINNESOTA · PI FINNO, CARRIE · 2013 to 2017
$599k
NCATS NIH HHS L40 TR001136NICHD NIH HHS R00 HD073270NIEHS NIH HHS T32 ES007032NIH HHS K01 OD015134
6 · The paper itself

Abstract

Specific spontaneous heritable neurodegenerative diseases have been associated with lower serum and cerebrospinal fluid α-tocopherol (α-TOH) concentrations. Equine neuroaxonal dystrophy (eNAD) has similar histologic lesions to human ataxia with vitamin E deficiency caused by mutations in the α-TOH transfer protein gene (TTPA). Mutations in TTPA are not present with eNAD and the molecular basis remains unknown. Given the neuropathologic phenotypic similarity of the conditions, we assessed the molecular basis of eNAD by global transcriptome sequencing of the cervical spinal cord. Differential gene expression analysis identified 157 significantly (FDR<0.05) dysregulated transcripts within the spinal cord of eNAD-affected horses. Statistical enrichment analysis identified significant downregulation of the ionotropic and metabotropic group III glutamate receptor, synaptic vesicle trafficking and cholesterol biosynthesis pathways. Gene co-expression analysis identified one module of upregulated genes significantly associated with the eNAD phenotype that included the liver X receptor (LXR) targets CYP7A1, APOE, PLTP and ABCA1. Validation of CYP7A1 and APOE dysregulation was performed in an independent biologic group and CYP7A1 was found to be additionally upregulated in the medulla oblongata of eNAD horses. Evidence of LXR activation supports a role for modulation of oxysterol-dependent LXR transcription factor activity by tocopherols. We hypothesize that the protective role of α-TOH in eNAD may reside in its ability to prevent oxysterol accumulation and subsequent activation of the LXR in order to decrease lipid peroxidation associated neurodegeneration.

Indexed as

Transcription, GeneticTranscriptomeAnimalsApolipoproteins EATP Binding Cassette Transporter 1Carrier ProteinsCholesterol 7-alpha-HydroxylaseFemaleGene Expression ProfilingGene Expression RegulationGene OntologyHorsesLiver X ReceptorsMaleMedulla OblongataMolecular Sequence Annotationalpha-tocopherol transfer proteinApolipoproteins EATP Binding Cassette Transporter 1Carrier ProteinsCholesterol 7-alpha-HydroxylaseLiver X ReceptorsPhospholipid Transfer ProteinsReceptors, Ionotropic GlutamateReceptors, Metabotropic GlutamateRNA, MessengerCholesterolRNA-sequencingVitamin E

Identifiers

PMID27751910
PMCPMC5154892
OpenAlexW2537901976

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.