Evidence map›Paper›PMID 27748408›Full record

ArticleScientific reports2016

Dynamic Phosphoproteome Analysis of Seedling Leaves in Brachypodium distachyon L. Reveals Central Phosphorylated Proteins Involved in the Drought Stress Response.

Lin-Lin Yuan, Ming Zhang, Xing Yan, Yan-Wei Bian, Shou-Min Zhen, Yue-Ming Yan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. A Phosphoproteomics Study of the SoybeanFrontiers in plant science · 2022
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. The Phosphoproteomic Response of Okra (International journal of molecular sciences · 2019
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lin-Lin YuanCollege of Life Science, Capital Normal University, 100048 Beijing, China.
Ming ZhangCollege of Life Science, Capital Normal University, 100048 Beijing, China.
Xing YanCollege of Life Science, Capital Normal University, 100048 Beijing, China.
Yan-Wei BianCollege of Life Science, Capital Normal University, 100048 Beijing, China.
Shou-Min ZhenCollege of Life Science, Capital Normal University, 100048 Beijing, China.
Yue-Ming YanCollege of Life Science, Capital Normal University, 100048 Beijing, China.
Capital Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought stress is a major abiotic stress affecting plant growth and development. In this study, we performed the first dynamic phosphoproteome analysis of Brachypodium distachyon L. seedling leaves under drought stress for different times. A total of 4924 phosphopeptides, contained 6362 phosphosites belonging to 2748 phosphoproteins. Rigorous standards were imposed to screen 484 phosphorylation sites, representing 442 unique phosphoproteins. Comparative analyses revealed significant changes in phosphorylation levels at 0, 6, and 24 h under drought stress. The most phosphorylated proteins and the highest phosphorylation level occurred at 6 h. Venn analysis showed that the up-regulated phosphopeptides at 6 h were almost two-fold those at 24 h. Motif-X analysis identified the six motifs: [sP], [Rxxs], [LxRxxs], [sxD], [sF], and [TP], among which [LxRxxs] was also previously identified in B. distachyon. Results from molecular function and protein-protein interaction analyses suggested that phosphoproteins mainly participate in signal transduction, gene expression, drought response and defense, photosynthesis and energy metabolism, and material transmembrane transport. These phosphoproteins, which showed significant changes in phosphorylation levels, play important roles in signal transduction and material transmembrane transport in response to drought conditions. Our results provide new insights into the molecular mechanism of this plant's abiotic stress response through phosphorylation modification.

Indexed as

Gene Expression Regulation, PlantBrachypodiumDroughtsGene Expression ProfilingOxidative StressPhenotypePhosphoproteinsPhosphorylationPhotosynthesisPlant LeavesPlant ProteinsProteomeSeedlingsSignal TransductionStress, PhysiologicalPhosphoproteinsPlant ProteinsProteome

Identifiers

PMID27748408
PMCPMC5066223
OpenAlexW2533533813

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.