Evidence map›Paper›PMID 27746231›Full record

ArticleJournal of neuroscience methods2017

Tracking recurrence of correlation structure in neuronal recordings.

Samuel A Neymotin, Zoe N Talbot, Jeeyune Q Jung, André A Fenton, William W Lytton

Open access · bronzeAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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  9. Phencyclidine Discoordinates Hippocampal Network Activity But Not Place Fields.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Samuel A NeymotinDepartment of Physiology & Pharmacology, SUNY Downstate, United States. Electronic address: samn@neurosim.downstate.edu.
Zoe N TalbotCenter for Neural Science, New York University, United States; Graduate Program of Neuroscience and Physiology, NYU School of Medicine, United States.
Jeeyune Q JungWhitman Center, Marine Biological Laboratory, United States.
André A FentonDepartment of Physiology & Pharmacology, SUNY Downstate, United States; Center for Neural Science, New York University, United States.
William W LyttonDepartment of Physiology & Pharmacology, SUNY Downstate, United States; Department of Neurology, SUNY Downstate, United States; Department of Neurology, Kings County Hospital Center, United States; Whitman Center, Marine Biological Laboratory, United States.
Marine Biological Laboratory · USSUNY Downstate Health Sciences University · USNew York University · US

Funding

Extension of NEURON simulator for simulation of reaction-diffusion in neuronsR01MH086638 · NIMH · SUNY DOWNSTATE MEDICAL CENTER · PI LYTTON, WILLIAM W, MCDOUGAL, ROBERT A. · 2010 to 2025
$6.0M
Training Systems and Integrative NeuroscienceT32MH019524 · NIMH · NEW YORK UNIVERSITY · PI KIORPES, LYNNE · 1992 to 2025
$5.2M
Microconnectomics of neocortex: a multiscale computer modelU01EB017695 · NIBIB · SUNY DOWNSTATE MEDICAL CENTER · PI LYTTON, WILLIAM W · 2014 to 2017
$2.3M
Translation, Synchrony, and CognitionR01MH099128 · NIMH · NEW YORK UNIVERSITY · PI FENTON, ANDRE ANTONIO · 2013 to 2017
$2.0M
Neural coordination and cognitive disorganization in schizophrenia-related modelsR01MH084038 · NIMH · SUNY DOWNSTATE MEDICAL CENTER · PI FENTON, ANDRE ANTONIO · 2009 to 2013
$1.9M
Embedded Ensemble EncodingR01EB022903 · NIBIB · SUNY DOWNSTATE MEDICAL CENTER · PI ANTIC, SRDJAN D, LYTTON, WILLIAM W · 2016 to 2018
$1.5M
Commercializing digital wireless telemetry: the animal epilepsy monitoring unitR42NS064474 · NINDS · BIO-SIGNAL GROUP CORPORATION · PI FENTON, ANDRE ANTONIO · 2008 to 2009
$666k
NIBIB NIH HHS R01 EB022903NIBIB NIH HHS U01 EB017695NIMH NIH HHS R01 MH084038NIMH NIH HHS R01 MH086638NIMH NIH HHS R01 MH099128NIMH NIH HHS T32 MH019524NINDS NIH HHS R42 NS064474
6 · The paper itself

Abstract

backgroundCorrelated neuronal activity in the brain is hypothesized to contribute to information representation, and is important for gauging brain dynamics in health and disease. Due to high dimensional neural datasets, it is difficult to study temporal variations in correlation structure. NEW

methodWe developed a multiscale method, Population Coordination (PCo), to assess neural population structure in multiunit single neuron ensemble and multi-site local field potential (LFP) recordings. PCo utilizes population correlation (PCorr) vectors, consisting of pair-wise correlations between neural elements. The PCo matrix contains the correlations between all PCorr vectors occurring at different times.

resultsWe used PCo to interpret dynamics of two electrophysiological datasets: multisite LFP and single unit ensemble. In the LFP dataset from an animal model of medial temporal lobe epilepsy, PCo isolated anomalous brain states, where particular brain regions broke off from the rest of the brain's activity. In a dataset of rat hippocampal single-unit recordings, PCo enabled visualizing neuronal ensemble correlation structure changes associated with changes of animal environment (place-cell remapping). COMPARISON WITH EXISTING METHOD(S): PCo allows directly visualizing high dimensional data. Dimensional reduction techniques could also be used to produce dynamical snippets that could be examined for recurrence. PCo allows intuitive, visual assessment of temporal recurrence in correlation structure directly in the high dimensionality dataset, allowing for immediate assessment of relevant dynamics at a single site.

conclusionsPCo can be used to investigate how neural correlation structure occurring at multiple temporal and spatial scales reflect underlying dynamical recurrence without intermediate reduction of dimensionality.

Indexed as

PeriodicitySignal Processing, Computer-AssistedAction PotentialsAnimalsBrainDisease Models, AnimalElectrocorticographyEpilepsy, Temporal LobeExploratory BehaviorIbotenic AcidMaleMice, Inbred C57BLMicroelectrodesNeuronsRats, Long-EvansIbotenic AcidCorrelation structureLocal field potentialsMultiscale analysisNeuronal ensemblesTemporal recurrence

Identifiers

PMID27746231
PMCPMC5266613
OpenAlexW2531195663

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.