Evidence map›Paper›PMID 27745837›Full record

ArticleAmerican journal of human genetics2016

Robust Inference of Identity by Descent from Exome-Sequencing Data.

Wenqing Fu, Sharon R Browning, Brian L Browning, Joshua M Akey

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Wenqing FuDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address: wqfu@uw.edu.
Sharon R BrowningDepartment of Biostatistics, University of Washington, Seattle, WA 98195, USA.
Brian L BrowningDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA 98195, USA.
Joshua M AkeyDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address: akeyj@uw.edu.
University of Washington · USUniversity of Washington Medical Center · US

Funding

Statistical Methods for X-Chromosome Genetic DataP01GM099568 · NIGMS · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2012 to 2016
$7.3M
Statistical methods for inferring recent human demographic and evolutionary historyK99HG008122 · NHGRI · UNIVERSITY OF WASHINGTON · PI FU, WENQING · 2015 to 2016
$195k
NHGRI NIH HHS K99 HG008122NIGMS NIH HHS P01 GM099568
6 · The paper itself

Abstract

Identifying and characterizing genomic regions that are shared identical by descent (IBD) among individuals can yield insight into population history, facilitate the identification of adaptively evolving loci, and be an important tool in disease gene mapping. Although increasingly large collections of exome sequences have been generated, it is challenging to detect IBD segments in exomes, precluding many potentially informative downstream analyses. Here, we describe an approach, ExIBD, to robustly detect IBD segments in exome-sequencing data, rigorously evaluate its performance, and apply this method to high-coverage exomes from 6,515 European and African Americans. Furthermore, we show how IBD networks, constructed from patterns of pairwise IBD between individuals, and principles from graph theory provide insight into recent population history and reveal cryptic population structure in European Americans. Our results enable IBD analyses to be performed on exome data, which will expand the scope of inferences that can be made from existing massively large exome-sequencing datasets.

Indexed as

Databases, GeneticExomeSequence Analysis, DNABlack or African AmericanGenetics, PopulationGenome, HumanGenomicsGenotyping TechniquesHumansModels, BiologicalPolymorphism, Single NucleotideWhite People

Identifiers

PMID27745837
PMCPMC5097937
OpenAlexW2530737001

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.