Evidence map›Paper›PMID 27742414›Full record

ReviewTrends in molecular medicine2016

Family-Specific Variants and the Limits of Human Genetics.

Brian H Shirts, Colin C Pritchard, Tom Walsh

Open access · greenAbstract readReview
In one paragraph

Review in Trends in molecular medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 48 citations in OpenAlex.

  1. AlphaGenome Atlas:medRxiv : the preprint server for health sciences · 2026
    Article
  2. Article
  3. Review
  4. A scalable approach to resolving variants of uncertain significance.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Systematic and proactive evaluation of AIRE missense variant effects.bioRxiv : the preprint server for biology · 2025
    Article
  8. Mendelian causes of early-onset emphysema: a review of the current literature.European respiratory review : an official journal of the European Respiratory Society · 2025
    Review
  9. Comprehensively Testing the Function of Missense Variation in thebioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Multiplexed Functional Assessments ofCirculation. Genomic and precision medicine · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Brian H ShirtsDepartment of Laboratory Medicine, University of Washington, Seattle, WA, USA. Electronic address: shirtsb@uw.edu.
Colin C PritchardDepartment of Laboratory Medicine, University of Washington, Seattle, WA, USA.
Tom WalshDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA.
University of Washington · USUniversity of Washington Medical Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
COMPLETE VARIANT PROFILING OF ALL KNOWN BREAST CANCER GENESR01CA175716 · NCI · UNIVERSITY OF WASHINGTON · PI KING, MARY-CLAIRE, WALSH, TOMAS D · 2013 to 2017
$3.1M
Developing and Evaluating Patient Centered Tools for Clinical Classification of Variants of Uncertain SignificanceR21HG008513 · NHGRI · UNIVERSITY OF WASHINGTON · PI SHIRTS, BRIAN HANSON · 2015 to 2016
$386k
NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA175716NHGRI NIH HHS R21 HG008513
6 · The paper itself

Abstract

Every single-nucleotide change compatible with life is present in the human population today. Understanding these rare human variants defines an extraordinary challenge for genetics and medicine. The new clinical practice of sequencing many genes for hereditary cancer risk has illustrated the utility of clinical next-generation sequencing in adults, identifying more medically actionable variants than single-gene testing. However, it has also revealed a linear relationship between the length of DNA evaluated and the number of rare 'variants of uncertain significance' reported. We propose that careful approaches to phenotype-genotype inference, distinguishing between diagnostic and screening intent, in conjunction with expanded use of family-scale genetics studies as a source of information on family-specific variants, will reduce variants of uncertain significance reported to patients.

Indexed as

Genetic VariationGenetic Predisposition to DiseaseGenetics, MedicalGenetic TestingGenotypeHigh-Throughput Nucleotide SequencingHumansPedigreePhenotypePolymorphism, Single NucleotideUncertainty

Identifiers

PMID27742414
PMCPMC6197474
OpenAlexW2531667516

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.