Evidence map›Paper›PMID 27739665›Full record

ArticleACS infectious diseases2016

Design of Selective Substrates and Activity-Based Probes for Hydrolase Important for Pathogenesis 1 (HIP1) from Mycobacterium tuberculosis.

Christian S Lentz, Alvaro A Ordonez, Paulina Kasperkiewicz, Florencia La Greca, Anthony J O'Donoghue, Christopher J Schulze, James C Powers, Charles S Craik, Marcin Drag, Sanjay K Jain and 1 more

Abstract read
In one paragraph

Article in ACS infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
  2. Article
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  5. Article
  6. Article
  7. Target Identification in Anti-Tuberculosis Drug Discovery.International journal of molecular sciences · 2023
    Review
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  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Christian S Lentz
Alvaro A Ordonez
Paulina KasperkiewiczDivision of Bioorganic Chemistry, Faculty of Chemistry, Wroclaw University of Technology , Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland.
Florencia La GrecaDepartment of Pharmaceutical Chemistry, University of California-San Francisco , San Francisco, United States.
Anthony J O'DonoghueDepartment of Pharmaceutical Chemistry, University of California-San Francisco , San Francisco, United States.
Christopher J Schulze
James C PowersDepartment of Chemistry, Georgia Institute of Technology , Atlanta, Georgia 30332, United States.
Charles S CraikDepartment of Pharmaceutical Chemistry, University of California-San Francisco , San Francisco, United States.
Marcin DragDivision of Bioorganic Chemistry, Faculty of Chemistry, Wroclaw University of Technology , Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland.
Sanjay K Jain
Matthew Bogyo

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
Novel Imaging Tracers for Rapid and Noninvasive Assessment of Bacterial InfectionR01EB020539 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI JAIN, SANJAY · 2014 to 2018
$3.6M
Small Molecule Imaging of Protease ActivityR01EB005011 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2005 to 2013
$3.0M
Equipment supplement for Chemical methods to study protein palmitoylation pathwaysR01GM111703 · NIGMS · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2014 to 2017
$1.6M
NIBIB NIH HHS R01 EB005011NIBIB NIH HHS R01 EB020539NIGMS NIH HHS P50 GM082250NIGMS NIH HHS R01 GM111703
6 · The paper itself

Abstract

Although serine proteases are important mediators of Mycobacterium tuberculosis (Mtb) virulence, there are currently no tools to selectively block or visualize members of this family of enzymes. Selective reporter substrates or activity-based probes (ABPs) could provide a means to monitor infection and response to therapy using imaging methods. Here, we use a combination of substrate selectivity profiling and focused screening to identify optimized reporter substrates and ABPs for the Mtb "Hydrolase important for pathogenesis 1" (Hip1) serine protease. Hip1 is a cell-envelope-associated enzyme with minimal homology to host proteases, making it an ideal target for probe development. We identified substituted 7-amino-4-chloro-3-(2-bromoethoxy)isocoumarins as irreversible inhibitor scaffolds. Furthermore, we used specificity data to generate selective reporter substrates and to further optimize a selective chloroisocoumarin inhibitor. These new reagents are potentially useful in delineating the roles of Hip1 during pathogenesis or as diagnostic imaging tools for specifically monitoring Mtb infections.

Indexed as

AnimalsAntitubercular AgentsBacterial ProteinsDrug DesignEnzyme InhibitorsHumansKineticsMolecular StructureMycobacterium tuberculosisSerine ProteasesSubstrate SpecificityTuberculosisAntitubercular AgentsBacterial ProteinsEnzyme InhibitorsHip1 protein, Mycobacterium tuberculosisSerine Proteasesactivity-based probefluorogenic substratehydrolase important for pathogenesis 1 (Hip1)Mycobacterium tuberculosisproteasesubstrate profiling

Identifiers

PMID27739665
PMCPMC5109297

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.