Evidence map›Paper›PMID 27739453›Full record

ArticleScientific reports2016

A nuclear-replicating viroid antagonizes infectivity and accumulation of a geminivirus by upregulating methylation-related genes and inducing hypermethylation of viral DNA.

Enza Maria Torchetti, Mattia Pegoraro, Beatriz Navarro, Marco Catoni, Francesco Di Serio, Emanuela Noris

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. PSTVd infection inFrontiers in plant science · 2023
    Article
  5. Review
  6. Article
  7. Degradome Analysis of Tomato andInternational journal of molecular sciences · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Enza Maria TorchettiInstitute for Sustainable Plant Protection, National Research Council of Italy, Bari, 70126, Italy.
Mattia PegoraroInstitute for Sustainable Plant Protection, National Research Council of Italy, Torino, 10135, Italy.
Beatriz NavarroInstitute for Sustainable Plant Protection, National Research Council of Italy, Bari, 70126, Italy.
Marco CatoniThe Sainsbury Laboratory, University of Cambridge, Cambridge, CB2 1LR, United Kingdom.
Francesco Di SerioInstitute for Sustainable Plant Protection, National Research Council of Italy, Bari, 70126, Italy.
Emanuela NorisInstitute for Sustainable Plant Protection, National Research Council of Italy, Torino, 10135, Italy.
Institute for Sustainable Plant Protection · ITNational Research Council · ITSainsbury Laboratory · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA methylation and post-transcriptional gene silencing play critical roles in controlling infection of single-stranded (ss) DNA geminiviruses and ssRNA viroids, respectively, but both pathogens can counteract these host defense mechanisms and promote their infectivity. Moreover, a specific role of DNA methylation in viroid-host interactions is not yet confirmed. Here, using an experimental system where two nuclear-replicating agents, the geminivirus tomato yellow leaf curl Sardinia virus (TYLCSV) and potato spindle tuber viroid (PSTVd), co-infect their common host tomato, we observed that PSTVd severely interferes with TYLCSV infectivity and accumulation, most likely as a consequence of strong activation of host DNA methylation pathways. In fact, PSTVd alone or in co-infection with TYLCSV significantly upregulates the expression of key genes governing DNA methylation in plants. Using methylation-sensitive restriction and bisulfite conversion assays, we further showed that PSTVd infection promotes a strong hypermethylation of TYLCSV DNA, thus supporting a mechanistic link with the antagonism of the viroid on the virus in co-infected tomato plants. These results describe the interaction between two nuclear-replicating pathogens and show that they differentially interfere with DNA methylation pathways.

Indexed as

DNA MethylationDNA ReplicationViral InterferenceCell NucleusDNA, ViralGeminiviridaeSolanum lycopersicumViroidsDNA, Viral

Identifiers

PMID27739453
PMCPMC5064398
OpenAlexW2531479912

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.